feat: added per-read flag and map quality filtering#194
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TimD1 wants to merge 3 commits intogriffithlab:masterfrom
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feat: added per-read flag and map quality filtering#194TimD1 wants to merge 3 commits intogriffithlab:masterfrom
TimD1 wants to merge 3 commits intogriffithlab:masterfrom
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- closes griffithlab#176, CMake was including `src/utils/bedtools/gzstream/version` as a C++ source file, when it was a simple text file containing version info - I moved this version info into `src/utils/bedtools/gzstream/README`
- fixes griffithlab#188, min_intron_length_ was accidentally set from min_anchor_len_
- closes griffithlab#183, flag based filtering - closes griffithlab#189, mapping quality based filtering - option '-F' filters reads containing any of these flags - option '-f' filters reads not containing all these flags - option '-q' filters reads below this mapping quality
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junctions extract#189, mapping quality based filtering