Gdr 3418

[darsoo]

Description

What changed?

Replaced the Docker-based pkgdown workflow with a lightweight r-lib/actions-based approach. Removed dependency on the marcinkam/gdrshiny Docker image, docker/build-push-action, and private access token secrets. The workflow now uses r-lib/actions/setup-r and r-lib/actions/setup-r-dependencies to install R and package dependencies directly on the runner.

Related JIRA issue: GDR-3418

Why was it changed?

The Docker base image marcinkam/gdrshiny:1.0 is no longer accessible on Docker Hub, causing all pkgdown workflow runs to fail. Since all github gDR packages are publicly available in Bioconductor and on GitHub, Docker is unnecessary for pkgdown site generation. The r-lib/actions approach is the standard in the R community — simpler, easier to maintain, and has no external image dependency

EDIT:

• Replaced Docker-based CI workflow (main.yml) with r-lib/actions, calling gDRstyle::checkPackage() directly instead of per-repo rplatform/run_tests.sh
• Split CI into separate jobs: check_membership, external_check, internal_trigger, deploy-dev
• Removed exit 1 hack — internal_trigger now succeeds after triggering GitLab
• external_check posts test-result commit status, matching GitLab's behavior for consistent branch protection
• Renamed workflow display name from main to CI
• Branch protection should require test-result status check (from any source)

[gemini-code-assist]

Note

Gemini is unable to generate a review for this pull request due to the file types involved not being currently supported.

[gladkia]

GJ!