MNI coordinate calculation, storage, and display#135

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smerdis wants to merge 37 commits intogallantlab:mainfrom

Commits on Sep 9, 2015

added some initial documentation on the Aligner module.
smerdis
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Commits on Sep 23, 2015

current state of the align_to_mni function, which has all the components in place but is still waiting for WarpMapper and its final form.
smerdis
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stub WarpMapper and modified list of mappers to include it.
smerdis
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Commits on Sep 30, 2015

Commits on Oct 1, 2015

deleted warpmapper since it's not actually needed and pointmapper will do, reverted the addition in __init__ also
smerdis
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Commits on Oct 14, 2015

Commits on Oct 23, 2015

Commits on Oct 27, 2015

Commits on Nov 9, 2015

styling changes to make the coordinates box less space-filling.
smerdis
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Commits on Nov 11, 2015

Commits on Nov 13, 2015

moved align.py/anat_to_mni() to surfinfo.py/mni_nl() and removed its return values
smerdis
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Commits on Nov 14, 2015

changed the native space display to be voxels, not mm. changes to both the picker and the function that reacts to coord space radio button.
smerdis
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Commits on Nov 17, 2015

Commits on Nov 18, 2015

Commits on Nov 19, 2015

fixed coordinate display and search so that MNI coords are in mm, the other set (which i call 'magnet' in the code) is in voxel indices. both of these are correctly displayed and can be searched ag…
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Commits on Nov 24, 2015