take Filipe's most recent additions #15
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minor fixes
fixed builder to detect biomass added compounds
notebook update
biomass update
biomass bug fix
Checking in biomass and gapfilling fixes 2
Updates to fix gapfilling and string concatenation
genome feature aliases
minor fix
bumped to version 0.4.0
Sync local dev branch with upstream changes Merging latest updates from upstream/dev to keep our fork in sync with the main repository. This brings in the latest features and bug fixes from the original project.
msatpcorrection.py default path + reactions pathways
changes in MSTemplate file to add additional biomass categories
genome IO
pigment fix
gbff support
mstemplate biomass
Fixing correct use of inheritance for build_constraint() function
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