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ci: Set Snakemake to v7.32.0 #1

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ci: Set Snakemake to v7.32.0 #1

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ca568d0
Set Snakemake to v7.32.0
ezherman Dec 21, 2023
c8eac58
Change yaml location
ezherman Dec 21, 2023
76ceecd
snakefmt
Dec 21, 2023
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10 changes: 5 additions & 5 deletions .github/workflows/main.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -25,7 +25,7 @@ jobs:
steps:
- uses: actions/checkout@v2
- name: Lint workflow
uses: snakemake/snakemake-github-action@v1.24.0
uses: ezherman/snakemake-github-action@5027c0e706ada924ab91e0501bd92185fc98de3c
with:
directory: .
snakefile: workflow/Snakefile
Expand All @@ -40,15 +40,15 @@ jobs:
- uses: actions/checkout@v2

- name: Test workflow
uses: snakemake/snakemake-github-action@v1.24.0
uses: ezherman/snakemake-github-action@5027c0e706ada924ab91e0501bd92185fc98de3c
with:
directory: .test
snakefile: workflow/Snakefile
args: "--use-conda --show-failed-logs --cores 3 --conda-cleanup-pkgs cache --all-temp"
args: "--use-conda --show-failed-logs --cores 1 --conda-cleanup-pkgs cache --all-temp"

- name: Test report
uses: snakemake/snakemake-github-action@v1.24.0
uses: ezherman/snakemake-github-action@5027c0e706ada924ab91e0501bd92185fc98de3c
with:
directory: .test
snakefile: workflow/Snakefile
args: "--report report.zip"
args: "--report report.zip"
16 changes: 10 additions & 6 deletions workflow/Snakefile
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@@ -1,11 +1,15 @@
# Main entrypoint of the workflow.
# Please follow the best practices:
# Main entrypoint of the workflow.
# Please follow the best practices:
# https://snakemake.readthedocs.io/en/stable/snakefiles/best_practices.html,
# in particular regarding the standardized folder structure mentioned there.
# in particular regarding the standardized folder structure mentioned there.


rule touch:
output: "file.txt"
conda: "../envs/empty.yaml"
log: "logs/touch.log"
output:
"file.txt",
conda:
"envs/empty.yaml"
log:
"logs/touch.log",
shell:
"touch {output}"