v1.3.0: Fixed non-MPI build (#36)

Bug fix to XP-EHH

Note: Have also flipped the numerator and denominator when calculating unstandardised iHS

Release v1.2.0

Fixed XP-EHH output.

Release v1.1.0 - add support for iHH and minor fixes

This minor release changes the binning method used by hapbin slightly, and adds functionality to output iHH values.

Release notes:

• Added iHH output. Merged std and unstd output files.
• Added max-extend support
• Fixed frequency binning to round down to nearest bin rather than using nearest. Also changed to using number of bins rather than bin size.
• Fixed MAF threshold text which previously always displayed 0.05 as the threshold even when set with the --minmaf flag to something else.
• Fixed crash on badly formatted map files
• Fixed binning and recording of "0.0" bin loci.

Initial release

Initial public release of hapbin suite of tools.

This version is the same as described in the paper hapbin: An efficient program for performing haplotype based scans for positive selection in large genomic datasets (doi: 10.1093/molbev/msv172) with a few corrections to the documentation.