intron-prospector

Identify putative introns in RNA-Seq alignments in BAM/SAM alignments. This works with both short and long-read RNA sequencing.

• intron-prospector - calls introns from SAM/BAM files
• intron-prospector-merge - merges output from multiple intron-prospector runs or convert between formats

Usage is described in the intron-prospector manual page and intron-prospector-merge manual page

Installation

See INSTALL.md for installation

The only dependencies are htslib and a modern C++ compiler

Origins

This code is derived from the Griffith Lab's excellent RegTools package.