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Updating claude skills for ModelSEEDpy specifically and adding minor … Run Pre-Commit #199: Commit 58fc29e pushed by cshenry
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Fixing handling of media file Run Pre-Commit #198: Commit b9fc22b pushed by cshenry
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Adjust dependency so MS2 apps will build Run Pre-Commit #197: Commit f6620d6 pushed by cshenry
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Fixes to media and expression analysis and modelutl Run Pre-Commit #196: Commit 5238114 pushed by cshenry
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Adding claude commands and system prompt to hopefully improve perform… Run Pre-Commit #195: Commit 87463dc pushed by cshenry
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Merge pull request #23 from cshenry/claude/add-function-msexpression-… Run Pre-Commit #194: Commit 01f9e30 pushed by cshenry
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Add average_expression_replicates method to MSExpression Run Pre-Commit #193: Pull request #23 opened by cshenry
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Improvements to expression object Run Pre-Commit #192: Commit ac62f9b pushed by cshenry
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Fix build_reaction_expression to support direct gene ID matching Run Pre-Commit #191: Commit 65c7401 pushed by cshenry
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Fixing bug Run Pre-Commit #190: Commit 9ffac0e pushed by cshenry
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Debugging Run Pre-Commit #189: Commit 8b93b73 pushed by cshenry
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Debugging large coefficients Run Pre-Commit #188: Commit db48982 pushed by cshenry
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Removing MSCommunity temporarily Run Pre-Commit #187: Commit 3ad8d9e pushed by cshenry
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Removing start imports which cause immediate breaks in environments t… Run Pre-Commit #186: Commit 663a083 pushed by cshenry
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Adding new reference flux and fold change analysis scripts Run Pre-Commit #185: Commit 2b5ff50 pushed by cshenry
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feat: add fit_model_flux_to_data function to MSExpression class Run Pre-Commit #184: Commit d8bffb6 pushed by cshenry
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Checking in latest code with new fba packages and fixes to phenotype … Run Pre-Commit #183: Commit 16130f8 pushed by cshenry
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Merge commit 'cc095d6d49959f1d9018ec71e6f31ee3eb8a2d25' Run Pre-Commit #182: Commit ca05193 pushed by cshenry
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Fixing path to ModelSEEDDatanase in config file for KBase app Run Pre-Commit #181: Commit d39b0c1 pushed by cshenry
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Fixing ensemble code and annotation ontology Run Pre-Commit #180: Commit 3546e59 pushed by cshenry
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Fixing ensemble and removing prints Run Pre-Commit #179: Commit c2b88af pushed by cshenry
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Fixing bug causing gapfilled reactions to be KO during testing Run Pre-Commit #178: Commit 5455ff1 pushed by cshenry
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Fixing bug Run Pre-Commit #177: Commit 76e3507 pushed by cshenry
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Fixing ensemble and gapfilling Run Pre-Commit #176: Commit 844bf4a pushed by cshenry
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Fixing phenotype simulation and gapfilling debugging Run Pre-Commit #175: Commit 7c74a9e pushed by cshenry
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