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calctruequality.sh - Exception in thread "main" java.lang.AssertionError with callvars

Status: Open.

#18 In bbushnell/BBTools;

· masalgar opened on Apr 14, 2026

Aggressive Sequence Identifier Truncation with ignorejunk=t in filterbyname.sh v39.62

Status: Open.

#17 In bbushnell/BBTools;

· mmokrejs opened on Apr 3, 2026

Specify memory requirements with environment variables

Status: Open.

#16 In bbushnell/BBTools;

· prototaxites opened on Apr 1, 2026

changelog updates

Status: Open.

#15 In bbushnell/BBTools;

· OH-AU opened on Mar 31, 2026

The jar file of v39.81 have different base class path

Status: Open.

#14 In bbushnell/BBTools;

· daeho-ro opened on Mar 29, 2026

Support java option -Djava.io.tmpdir

Status: Open.

#13 In bbushnell/BBTools;

· fgvieira opened on Mar 25, 2026

Shuffle2 AssertionError

Status: Open.

#12 In bbushnell/BBTools;

· JavierMenRev opened on Mar 13, 2026

BBNorm - List size mismatch Assertion Error when Forward and Reverse Reads are not the same length

Status: Open.

#11 In bbushnell/BBTools;

· zacherydickson opened on Mar 9, 2026

bug: bbmerge.sh hangs on v39.56 and up

Status: Open.

#10 In bbushnell/BBTools;

· eboyden opened on Mar 7, 2026

Error in FASTQ, record 0, with these 4 lines: (missing plus)

Status: Open.

#9 In bbushnell/BBTools;

· schorlton-bugseq opened on Feb 24, 2026

[BUG?] Unable to recognize fq.gz file as a gzip file

Status: Open.

#8 In bbushnell/BBTools;

· hellopeccat opened on Jan 9, 2026

stats.sh buffer overruns?

Status: Open.

#7 In bbushnell/BBTools;

· colindaven opened on Jan 7, 2026