[Draft] Transfer scipy compressed matrices to java runtime

src/main/java/org/apache/sysds/runtime/util/Py4jConverterUtils.java

@@ -63,6 +63,44 @@ public static MatrixBlock convertSciPyCOOToMB(byte[] data, byte[] row, byte[] co
 		return mb;
 	}
 
+	public static MatrixBlock convertSciPyCSRToMB(byte[] data, byte[] indices, byte[] indptr, int rlen, int clen, int nnz) {
+		MatrixBlock mb = new MatrixBlock(rlen, clen, true);
+		mb.allocateSparseRowsBlock(false);
+		ByteBuffer dataBuf = ByteBuffer.wrap(data);
+		dataBuf.order(ByteOrder.nativeOrder());
+		ByteBuffer indicesBuf = ByteBuffer.wrap(indices);
+		indicesBuf.order(ByteOrder.nativeOrder());
+		ByteBuffer indptrBuf = ByteBuffer.wrap(indptr);
+		indptrBuf.order(ByteOrder.nativeOrder());
+
+		// Read indptr array to get row boundaries
+		int[] rowPtrs = new int[rlen + 1];
+		for(int i = 0; i <= rlen; i++) {
+			rowPtrs[i] = indptrBuf.getInt();
+		}
+
+		// Iterate through each row
+		for(int row = 0; row < rlen; row++) {
+			int startIdx = rowPtrs[row];
+			int endIdx = rowPtrs[row + 1];
+
+			// Set buffer positions to the start of this row
+			dataBuf.position(startIdx * Double.BYTES);
+			indicesBuf.position(startIdx * Integer.BYTES);
+
+			// Process all non-zeros in this row sequentially
+			for(int idx = startIdx; idx < endIdx; idx++) {
+				double val = dataBuf.getDouble();
+				int colIndex = indicesBuf.getInt();
+				mb.set(row, colIndex, val);
+			}
+		}
+
+		mb.recomputeNonZeros();
+		mb.examSparsity();
+		return mb;
+	}
+
 	public static MatrixBlock allocateDenseOrSparse(int rlen, int clen, boolean isSparse) {
 		MatrixBlock ret = new MatrixBlock(rlen, clen, isSparse);
 		ret.allocateBlock();

src/main/python/make_jar_and_package.sh

@@ -0,0 +1,24 @@
+#!/usr/bin/env bash
+#-------------------------------------------------------------
+#
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements.  See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership.  The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License.  You may obtain a copy of the License at
+#
+#   http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied.  See the License for the
+# specific language governing permissions and limitations
+# under the License.
+#
+#-------------------------------------------------------------
+
+mvn package -P distribution
+python create_python_dist.py

src/main/python/systemds/context/systemds_context.py

@@ -29,6 +29,7 @@
 import sys
 import struct
 import traceback
+import warnings
 from contextlib import contextmanager
 from glob import glob
 from queue import Queue
@@ -103,9 +104,18 @@ def __init__(
             The logging levels are as follows: 10 DEBUG, 20 INFO, 30 WARNING, 40 ERROR, 50 CRITICAL.
         :param py4j_logging_level: The logging level for Py4j to use, since all communication to the JVM is done through this,
             it can be verbose if not set high.
-        :param data_transfer_mode: default 0,
+        :param data_transfer_mode: default 0, 0 for py4j, 1 for using pipes (on unix systems)
+        :param multi_pipe_enabled: default False, if True, use multiple pipes for data transfer
+            only used if data_transfer_mode is 1.
+            .. experimental:: This parameter is experimental and may be removed in a future version.
         """
 
+        if multi_pipe_enabled:
+            warnings.warn(
+                "The 'multi_pipe_enabled' parameter is experimental and may be removed in a future version.",
+                DeprecationWarning,
+                stacklevel=2,
+            )
         self.__setup_logging(logging_level, py4j_logging_level)
         self.__start(port, capture_stdout)
         self.capture_stats(capture_statistics)