ci(he-tme): bump staging to 1.1.0

[ari-nz]

No description provided.

[Copilot]

Pull request overview

Updates the staging E2E test configuration for the H&E-TME (“he-tme”) application to reflect a newer deployed version, keeping environment-specific test expectations aligned with what staging runs.

Changes:

• Bump HETA_APPLICATION_VERSION for the staging environment from 1.0.0 to 1.1.0 in shared test constants.

[codecov]

❌ 3 Tests Failed:

Tests completed	Failed	Passed	Skipped
702	3	699	17

View the top 2 failed test(s) by shortest run time

tests.aignostics.application.gui_test::test_gui_download_dataset_via_application_to_run_cancel_to_find_back

Stack Traces | 3.06s run time

user = <nicegui.testing.user.User object at 0x7f3a20ec0b90>
runner = <typer.testing.CliRunner object at 0x7f3a20ec1310>
silent_logging = None
record_property = <function record_property.<locals>.append_property at 0x7f39f40a3270>

    @pytest.mark.e2e
    @pytest.mark.long_running
    @pytest.mark.flaky(retries=1, delay=5)
    @pytest.mark.timeout(timeout=60 * 10)
    @pytest.mark.sequential
    async def test_gui_download_dataset_via_application_to_run_cancel_to_find_back(  # noqa: PLR0915
        user: User, runner: CliRunner, silent_logging: None, record_property
    ) -> None:
        """Test that the user can download a dataset via the application page and cancel the run, then find it back."""
        record_property("tested-item-id", "TC-APPLICATION-GUI-04, SPEC-GUI-SERVICE")
        with tempfile.TemporaryDirectory() as tmpdir:
            tmp_path = Path(tmpdir)
    
            with patch(
                "aignostics.application._gui._page_application_describe.Path.home",
                return_value=tmp_path,
            ):
                # Download example wsi
                result = runner.invoke(
                    cli,
                    [
                        "dataset",
                        "aignostics",
                        "download",
                        SPOT_1_GS_URL,
                        str(tmp_path),
                    ],
                )
>               assert result.exit_code == 0
E               assert 1 == 0
E                +  where 1 = <Result SystemExit(1)>.exit_code

.../aignostics/application/gui_test.py:207: AssertionError

tests.aignostics.application.cli_test::test_cli_run_execute

Stack Traces | 3.92s run time

runner = <typer.testing.CliRunner object at 0x7f8552d7b620>
tmp_path = PosixPath('.../pytest-22/popen-gw7/test_cli_run_execute0')
record_property = <function record_property.<locals>.append_property at 0x7f8552c6c0f0>

    @pytest.mark.e2e
    @pytest.mark.very_long_running
    @pytest.mark.timeout(timeout=HETA_APPLICATION_DEADLINE_SECONDS + 60 * 30)
    def test_cli_run_execute(runner: CliRunner, tmp_path: Path, record_property) -> None:
        """Check run execution runs e2e."""
        record_property("tested-item-id", "TC-APPLICATION-CLI-03")
    
        # Step 1: Download the sample file
        result = runner.invoke(
            cli,
            [
                "dataset",
                "aignostics",
                "download",
                SPOT_1_GS_URL,
                str(tmp_path),
            ],
        )
    
        # Explore what was download
        print_directory_structure(tmp_path, "download")
    
        # Validate what was downloaded
>       assert "Successfully downloaded" in normalize_output(result.stdout)
E       assert 'Successfully downloaded' in "Downloading ━   0% … 0 0 ? Downloading 9375e3ed-28d2-4cf3-9fb9-8df9d11a6627.tiff                     … …                                                        Error downloading data from 'gs:.../aignx-storage-service-dev/sample_data_formatted/9375e3ed-28d2-4cf3-9fb9-8df9d11a6627.tiff': Failed to download data from 'gs:.../aignx-storage-service-dev/sample_data_formatted/9375e3ed-28d2-4cf3-9fb9-8df9d11a6627.tiff': 403 GET https://storage.googleapis..../aignx-storage-service-dev/o/sample_data_formatted%2F9375e3ed-28d2-4cf3-9fb9-8df9d11a6627.tiff?fields=name&prettyPrint=false: aignostics-platform-ext-a4f7e9@aignx-papi-prod-zkgprhen.iam.gserviceaccount.com does not have storage.objects.get access to the Google Cloud Storage object. Permission 'storage.objects.get' denied on resource (or it may not exist)."
E        +  where "Downloading ━   0% … 0 0 ? Downloading 9375e3ed-28d2-4cf3-9fb9-8df9d11a6627.tiff                     … …                                                        Error downloading data from 'gs:.../aignx-storage-service-dev/sample_data_formatted/9375e3ed-28d2-4cf3-9fb9-8df9d11a6627.tiff': Failed to download data from 'gs:.../aignx-storage-service-dev/sample_data_formatted/9375e3ed-28d2-4cf3-9fb9-8df9d11a6627.tiff': 403 GET https://storage.googleapis..../aignx-storage-service-dev/o/sample_data_formatted%2F9375e3ed-28d2-4cf3-9fb9-8df9d11a6627.tiff?fields=name&prettyPrint=false: aignostics-platform-ext-a4f7e9@aignx-papi-prod-zkgprhen.iam.gserviceaccount.com does not have storage.objects.get access to the Google Cloud Storage object. Permission 'storage.objects.get' denied on resource (or it may not exist)." = normalize_output("Downloading ━   0% … 0 0 ? Downloading 9375e3ed-28d2-4cf3-9fb9-8df9d11a6627.tiff\n                     … …                                                        \nError downloading data from 'gs:.../aignx-storage-service-dev/sample_data_formatted/9375e3ed-28d2-4cf3-9fb9-8df9d11a6627.tiff': Failed to download data from 'gs:.../aignx-storage-service-dev/sample_data_formatted/9375e3ed-28d2-4cf3-9fb9-8df9d11a6627.tiff': 403 GET https://storage.googleapis..../aignx-storage-service-dev/o/sample_data_formatted%2F9375e3ed-28d2-4cf3-9fb9-8df9d11a6627.tiff?fields=name&prettyPrint=false: aignostics-platform-ext-a4f7e9@aignx-papi-prod-zkgprhen.iam.gserviceaccount.com does not have storage.objects.get access to the Google Cloud Storage object. Permission 'storage.objects.get' denied on resource (or it may not exist).\n")
E        +    where "Downloading ━   0% … 0 0 ? Downloading 9375e3ed-28d2-4cf3-9fb9-8df9d11a6627.tiff\n                     … …                                                        \nError downloading data from 'gs:.../aignx-storage-service-dev/sample_data_formatted/9375e3ed-28d2-4cf3-9fb9-8df9d11a6627.tiff': Failed to download data from 'gs:.../aignx-storage-service-dev/sample_data_formatted/9375e3ed-28d2-4cf3-9fb9-8df9d11a6627.tiff': 403 GET https://storage.googleapis..../aignx-storage-service-dev/o/sample_data_formatted%2F9375e3ed-28d2-4cf3-9fb9-8df9d11a6627.tiff?fields=name&prettyPrint=false: aignostics-platform-ext-a4f7e9@aignx-papi-prod-zkgprhen.iam.gserviceaccount.com does not have storage.objects.get access to the Google Cloud Storage object. Permission 'storage.objects.get' denied on resource (or it may not exist).\n" = <Result SystemExit(1)>.stdout

.../aignostics/application/cli_test.py:879: AssertionError

View the full list of 1 ❄️ flaky test(s)

tests.aignostics.dataset.cli_test::test_cli_aignostics_download_sample

Flake rate in main: 8.82% (Passed 31 times, Failed 3 times)

Stack Traces | 4.15s run time

runner = <typer.testing.CliRunner object at 0x7f6a65b006b0>
tmp_path = PosixPath('.../pytest-18/popen-gw3/test_cli_aignostics_download_s1')
record_property = <function record_property.<locals>.append_property at 0x7f6a61982140>

    @pytest.mark.e2e
    @pytest.mark.flaky(retries=1, delay=5)
    @pytest.mark.timeout(timeout=60 * 2)
    def test_cli_aignostics_download_sample(runner: CliRunner, tmp_path: Path, record_property) -> None:
        """Check download functionality with dry-run option."""
        record_property("tested-item-id", "TC-DATASET-CLI-01")
        result = runner.invoke(
            cli,
            [
                "dataset",
                "aignostics",
                "download",
                SPOT_1_GS_URL,
                str(tmp_path),
            ],
        )
>       assert result.exit_code == 0
E       assert 1 == 0
E        +  where 1 = <Result SystemExit(1)>.exit_code

.../aignostics/dataset/cli_test.py:145: AssertionError

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[Copilot]

Pull request overview

Copilot reviewed 1 out of 1 changed files in this pull request and generated no new comments.

[sonarqubecloud]

Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarQube Cloud