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@YuLab-SMU

Bioinformatics Group @ SMU

Research group led by Prof. Guangchuang Yu in School of Basic Medical Sciences, Southern Medical University

长期招聘博士后,欢迎咨询。


The research group has developed a variety of widely recognized bioinformatics tools in the fields of biomedical knowledge mining and knowledge discovery (e.g., clusterProfiler, GOSemSim, DOSE), phylogenetic data integration and visualization (e.g., treeio, ggtree, ggtreeExtra), metagenomic data analysis (e.g., MicrobiotaProcess) and data visualization (e.g., ggbreak, aplot, enrichplot, ChIPseeker), etc., to help biologists explore and understand data.

Links

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  1. clusterProfiler clusterProfiler Public

    📊 A universal enrichment tool for interpreting omics data

    R 1.2k 265

  2. ggtree ggtree Public

    🎄Visualization and annotation of phylogenetic trees

    R 922 183

  3. MicrobiotaProcess MicrobiotaProcess Public

    🦠 A comprehensive R package for deep mining microbiome

    R 191 37

  4. ChIPseeker ChIPseeker Public

    🎯 ChIP peak Annotation, Comparison and Visualization

    R 250 78

  5. aplot aplot Public

    Decorate a plot with associated information

    R 127 17

  6. aisdk aisdk Public

    A production-grade framework for building AI-powered applications in R.

    R 6

Repositories

Showing 10 of 120 repositories
  • DOSE Public

    😷 Disease Ontology Semantic and Enrichment analysis

    YuLab-SMU/DOSE’s past year of commit activity
    R 125 34 22 0 Updated Mar 15, 2026
  • clusterProfiler Public

    📊 A universal enrichment tool for interpreting omics data

    YuLab-SMU/clusterProfiler’s past year of commit activity
    R 1,179 265 363 1 Updated Mar 15, 2026
  • ygc-blog Public

    Guangchuang Yu's Blog

    YuLab-SMU/ygc-blog’s past year of commit activity
    TypeScript 0 MIT 0 0 0 Updated Mar 14, 2026
  • TCMDATA Public
    YuLab-SMU/TCMDATA’s past year of commit activity
    R 8 2 0 1 Updated Mar 10, 2026
  • enrichit Public

    C++ Implementations of Functional Enrichment Analysis

    YuLab-SMU/enrichit’s past year of commit activity
    C++ 0 2 0 0 Updated Mar 10, 2026
  • ggtree Public

    🎄Visualization and annotation of phylogenetic trees

    YuLab-SMU/ggtree’s past year of commit activity
    R 922 183 191 0 Updated Mar 9, 2026
  • treedata-book-2ed Public

    📖 Data Integration, Manipulation and Visualization of Phylogenetic Trees

    YuLab-SMU/treedata-book-2ed’s past year of commit activity
    HTML 0 0 0 0 Updated Mar 9, 2026
  • biomedical-knowledge-mining-book Public

    📚 Biomedical knowledge mining using GOSemSim and clusterProfiler

    YuLab-SMU/biomedical-knowledge-mining-book’s past year of commit activity
    TeX 89 30 22 0 Updated Mar 8, 2026
  • yulab-smu.github.io Public

    🏠 Homepage for YuLab-SMU

    YuLab-SMU/yulab-smu.github.io’s past year of commit activity
    HTML 14 5 0 0 Updated Mar 6, 2026
  • aisdk Public

    A production-grade framework for building AI-powered applications in R.

    YuLab-SMU/aisdk’s past year of commit activity
    R 6 0 0 0 Updated Mar 6, 2026