Submit tasks as job arrays and fix RNAs in distill summaries#472

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tpall wants to merge 92 commits into

WrightonLabCSU:devfrom

Commits on Nov 20, 2025

Commits on Nov 21, 2025

Commits on Nov 25, 2025

Refactor distill script and configuration for improved clarity and functionality
tpall
committed

Commits on Nov 26, 2025

Refactor input and output path definitions for consistency in the SUMMARIZE process
tpall
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Fix conditional check for gene columns in genome summary export to prevent errors
tpall
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Refactor channel usage for consistency across workflows and improve readability
tpall
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Commits on Nov 27, 2025

Update SUMMARIZE module to use parameterized fasta column for grouping
tpall
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Commits on Nov 28, 2025

Commits on Dec 1, 2025

Updated combine_annotations.py to fix binwise summary. TODO: getting rid of FASTA_COLUMN environment variable
tpall
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Commits on Dec 18, 2025

Add QC:COLLECT_RNA to array pattern
tpall
authored

Commits on Dec 23, 2025

Commits on Mar 3, 2026

Merge branch 'dev' of https://github.com/WrightonLabCSU/DRAM into dev
tpall
committed

Commits on Apr 25, 2026

Commits on Apr 26, 2026

fix(annotate): drop MMSEQS_INDEX publishDir to save disk

tpall
and
claude
committed

Commits on Apr 27, 2026

Commits on Apr 28, 2026

Commits on Apr 29, 2026

Commits on May 6, 2026

Commits on May 7, 2026

Commits on May 8, 2026