Restored full matrix of OS and Python versions. #33
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Codecov Report✅ All modified and coverable lines are covered by tests. Additional details and impacted files@@ Coverage Diff @@
## main #33 +/- ##
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Coverage 72.42% 72.42%
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Files 2 2
Lines 486 486
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Hits 352 352
Misses 134 134
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Test Results (py3.11 on ubuntu-22.04)48 tests 48 ✅ 1m 25s ⏱️ Results for commit fd51531. ♻️ This comment has been updated with latest results. |
Test Results (py3.10 on ubuntu-22.04)48 tests 48 ✅ 1m 27s ⏱️ Results for commit fd51531. ♻️ This comment has been updated with latest results. |
Test Results (py3.13 on ubuntu-22.04)48 tests 48 ✅ 1m 36s ⏱️ Results for commit fd51531. ♻️ This comment has been updated with latest results. |
Test Results (py3.12 on ubuntu-22.04)48 tests 48 ✅ 2m 29s ⏱️ Results for commit fd51531. ♻️ This comment has been updated with latest results. |
…calls Python 3.11+ has stricter error handling in subprocess.check_output() which causes tests to fail when vspace prompts for directory override confirmation. Solution: Add -f (force) flag to all subprocess.check_output(["vspace", ...]) calls to bypass interactive prompts in tests. Fixed 15 test files: - tests/FileOps/test_file_operations.py - tests/GridMode/test_multi_parameter.py - tests/Random/* (8 files) - tests/Vspace_* (5 files) This ensures tests run non-interactively on all Python versions (3.9-3.13). 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
Modified test files to include stderr=subprocess.STDOUT in subprocess.check_output() calls to capture error messages from vspace when tests fail on Python 3.11+. This will help diagnose the root cause of failures in: - test_gaussian_min_cutoff - test_gaussian_max_cutoff - test_gaussian_both_cutoffs - test_vspace_predefprior_npy - test_vspace_predefprior_txt
NumPy 2.0+ (used in Python 3.11+) no longer allows implicit conversion of 1-element arrays to scalars when assigning to array elements. This caused ValueError: 'setting an array element with a sequence' in the Gaussian and log-normal cutoff resampling code. Fixed by explicitly extracting the scalar value using [0] index for all 6 instances where np.random.normal() or np.random.lognormal() with size=1 is assigned to an array element. This resolves test failures on Python 3.11+ for: - test_gaussian_min_cutoff - test_gaussian_max_cutoff - test_gaussian_both_cutoffs - test_vspace_predefprior_npy - test_vspace_predefprior_txt All 48 tests now pass on both Python 3.9 and Python 3.11+.
Removed deprecated features section about Hyak PBS integration and updated recommendations for modern alternatives.
…vspace into comprehensive-testing
…netaryLaboratory/vspace into comprehensive-testing
Test Results (py3.14 on ubuntu-22.04)48 tests 48 ✅ 1m 11s ⏱️ Results for commit fd51531. ♻️ This comment has been updated with latest results. |
Modernize the pip-install workflow following the working BigPlanet template: - Update Python versions from 3.7-3.9 to 3.9-3.14 (matching project requirements) - Update OS matrix to use specific versions: macos-15-intel, macos-26, ubuntu-22.04, ubuntu-24.04 - Upgrade GitHub Actions versions: - actions/checkout@v3 → v4 - actions/setup-python@v4 → v5 - actions/upload-artifact@v3 → v4 - actions/download-artifact@v3 → v4 - Add allow-prereleases flag for Python 3.14 support - Replace deprecated pep517 with modern python -m build - Update build dependencies: add build, setuptools, wheel - Add artifact naming to prevent conflicts in multi-job builds - Modernize PyPI upload: - Use trusted publishing with id-token permissions - Update to pypa/gh-action-pypi-publish@release/v1 - Remove deprecated password-based authentication - Add merge-multiple for artifact downloads This ensures the release workflow follows current GitHub Actions and PyPI best practices.
Test Results (py3.9 on ubuntu-24.04)48 tests 48 ✅ 1m 18s ⏱️ Results for commit fd51531. |
Test Results (py3.14 on ubuntu-24.04)48 tests 48 ✅ 1m 4s ⏱️ Results for commit fd51531. |
Test Results (py3.11 on ubuntu-24.04)48 tests 48 ✅ 1m 18s ⏱️ Results for commit fd51531. |
Test Results (py3.10 on ubuntu-24.04)48 tests 48 ✅ 1m 22s ⏱️ Results for commit fd51531. |
Test Results (py3.13 on ubuntu-24.04)48 tests 48 ✅ 1m 23s ⏱️ Results for commit fd51531. |
Test Results (py3.12 on ubuntu-24.04)48 tests 48 ✅ 2m 29s ⏱️ Results for commit fd51531. |
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