January Newsletter

.all-contributorsrc

@@ -1037,6 +1037,17 @@
             "avatar_url": [
                 "https://avatars.githubusercontent.com/u/4965832?v=4"
             ]
+        },
+        {
+            "login": "manbat",
+            "name": "manbat",
+            "contributions": [
+                "code"
+            ],
+            "profile": "https://github.com/manbat",
+            "avatar_url": [
+                "https://avatars.githubusercontent.com/u/41646490?v=4"
+            ]
         }
     ],
     "contributorsPerLine": 7

.gitignore

@@ -1,4 +1,3 @@
-Gemfile
 *.gem
 .jekyll-cache
 .bundle
@@ -7,3 +6,4 @@ _site
 Gemfile.lock
 .idea
 .DS_Store
+vendor/

.tributors

@@ -524,5 +524,9 @@
         "name": "Hannah Cohoon",
         "bio": "Doc student at UT's iSchool",
         "blog": "https://github.com/jlcohoon"
+    },
+    "manbat": {
+        "name": "manbat",
+        "blog": "https://github.com/manbat"
     }
 }

README.md

@@ -3,7 +3,7 @@
 https://us-rse.org
 
 <!-- ALL-CONTRIBUTORS-BADGE:START - Do not remove or modify this section -->
-[![All Contributors](https://img.shields.io/badge/all_contributors-96-orange.svg?style=flat-square)](#contributors)
+[![All Contributors](https://img.shields.io/badge/all_contributors-97-orange.svg?style=flat-square)](#contributors)
 <!-- ALL-CONTRIBUTORS-BADGE:END -->
 
 ## What is this?
@@ -245,6 +245,7 @@ tool to generate a contributors graphic below.
       <td align="center" valign="top" width="14.28%"><a href="https://github.com/cdcore09"><img src="https://avatars.githubusercontent.com/u/127983572?v=4?s=100" width="100px;" alt="Cordero Core"/><br /><sub><b>Cordero Core</b></sub></a><br /><a href="https://github.com/USRSE/usrse.github.io/commits?author=cdcore09" title="Code">💻</a></td>
       <td align="center" valign="top" width="14.28%"><a href="https://github.com/maneesha"><img src="https://avatars.githubusercontent.com/u/829690?v=4?s=100" width="100px;" alt="maneesha"/><br /><sub><b>maneesha</b></sub></a><br /><a href="https://github.com/USRSE/usrse.github.io/commits?author=maneesha" title="Code">💻</a></td>
       <td align="center" valign="top" width="14.28%"><a href="https://github.com/jlcohoon"><img src="https://avatars.githubusercontent.com/u/4965832?v=4?s=100" width="100px;" alt="Hannah Cohoon"/><br /><sub><b>Hannah Cohoon</b></sub></a><br /><a href="https://github.com/USRSE/usrse.github.io/commits?author=jlcohoon" title="Code">💻</a></td>
+      <td align="center" valign="top" width="14.28%"><a href="https://github.com/manbat"><img src="https://avatars.githubusercontent.com/u/41646490?v=4?s=100" width="100px;" alt="manbat"/><br /><sub><b>manbat</b></sub></a><br /><a href="https://github.com/USRSE/usrse.github.io/commits?author=manbat" title="Code">💻</a></td>
     </tr>
   </tbody>
 </table>

_data/org-members.yaml

@@ -84,7 +84,7 @@ standard:
     founding_member: true
     tier: "Standard"
     contact: "Boyd Wilson <boyd@omnibond.com>"
-  - name: Darthmouth
+  - name: Dartmouth
     url: https://home.dartmouth.edu/
     figure: logo-dartmouth.png
     acronym:

_template/newsletter-template.md

@@ -239,24 +239,44 @@ Join the **R-RSE Affinity Group** to connect with fellow R users, share projects
 <a name="reads"></a>
 # 📚 **8. Featured Reads, Videos, and Podcasts**
 
-<!-- Add new articles and podcast links -->
+<!--
+  This section now uses an automated bibliography system powered by Zotero and BibTeX.
+
+  Workflow:
+  1. Throughout the month, collect interesting media in Zotero with the tag "newsletter"
+  2. Use Zotero's read status plugin to mark items as "Read" or "Unread"
+  3. Export the Zotero collection to _data/interesting_reads.bib (BibTeX format)
+  4. Run: python scripts/bibtex_to_yaml.py (converts BibTeX to YAML)
+  5. The bibliography will automatically render below, filtered by read_status
+
+  Manual entries can still be added in the sections below if needed.
+-->
 
 ### 📑 Recent Publications
 
-<!-- 
-
-Template format for publications:
-
-- **Y. Perez-Riverol, W. Bittremieux, W. S. Noble, L. Martens, A. Bilbao, M. R. Lazear, B. Grüning, D. S. Katz, M. J. MacCoss, C. Dai, J. K. Eng, R. Bouwmeester, M. R. Shortreed, E. Audain, T. Sachsenberg, J. Van Goey, G. Wallmann, B. Wen, L. Käll, W. E. Fondrie**, _"Open-Source and FAIR Research Software for Proteomics,"_ *Journal of Proteome Research*, Vol. 24, No. 5, pp. 2222–2234, 2025. [Read the article.](https://doi.org/10.1021/acs.jproteome.4c01079) 
+{% comment %}
+  Automatically render unread publications from the bibliography
+{% endcomment %}
+{% for entry in site.data.interesting_reads %}
+  {% if entry.read_status == 'Unread' and entry.type != 'misc' %}
+{% include bibliography-entry.html entry=entry %}
+  {% endif %}
+{% endfor %}
 
--->
+<!-- You can still add manual entries here if needed -->
 
 ### 📝 Blog Posts
 
-<!--
-Template format for blog posts:
-- **A. Mittal**, _"From Cloud Chaos to Developer Delight — A Practical Guide to Building Your First Internal Developer Platform,"_ Medium, May 19, 2025. [Read the post.](https://medium.com/@akshaymittal_90606/from-cloud-chaos-to-developer-delight-a-practical-guide-to-building-your-first-internal-ff3d12834ad0)
--->
+{% comment %}
+  Automatically render unread blog posts from the bibliography
+{% endcomment %}
+{% for entry in site.data.interesting_reads %}
+  {% if entry.read_status == 'Unread' and entry.type == 'misc' %}
+{% include bibliography-entry.html entry=entry %}
+  {% endif %}
+{% endfor %}
+
+<!-- You can still add manual entries here if needed -->
 
 ### 🎧 Podcast Highlights