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@dtm2451 dtm2451 commented Jul 26, 2023

This function runs DGE between 2 groups, and can loop across multiple clusters, running DGE within each one. It can account for one independent factor, like sequencing library or batch within its the model.

Before merge:

  • Fill out documentation more
  • Rename columns of the output to have more obvious meanings (e.g. 'coef' -> 'logFC')
  • add volcano.plot & fold.fold code too?

@dtm2451 dtm2451 closed this Aug 23, 2024
@dtm2451 dtm2451 reopened this Aug 23, 2024
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dtm2451 commented Aug 23, 2024

I might not plan to merge this branch into 'main', but regardless, @ravipatel4 I'd love a double-check of the DGE methodology if you have a chance. I inherited the original code, that I functionized here, through Nick from you!

@dtm2451 dtm2451 requested a review from ravipatel4 August 23, 2024 17:38
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