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@erflynn erflynn commented Jan 6, 2026

Initial attempt to set up dreamlet wrapper. Takes as input a pseudobulked count matrix and metadata.
I tried to follow conventions from Dan's examples where possible.
To do items:

  • add info about the default processAssays() behavior (which also filters based on min.cells)
  • add back in the dreamlet run df
  • update function to take ... and/or additional specific params to pass to dreamlet
  • add additional documentation (@dtm2451 I'm not sure what you generate the .txt file with?)
  • add example usage
  • additional testing

@dtm2451
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dtm2451 commented Jan 6, 2026

I make the txt file with document::document(), and the call was: document::document('single_cell/pseudobulk_function.R', output_directory = 'single_cell/', check_package = FALSE).

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3 participants