Pre-commit fix and REadme update

.github/workflows/pre-commit.yml

@@ -5,6 +5,8 @@ on:
     branches:
       - "**"
   pull_request:
+    branches:
+      - main
 
 jobs:
   pre-commit:
@@ -26,10 +28,14 @@ jobs:
           key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt', '**/requirements-dev.txt') }}
           restore-keys: ${{ runner.os }}-pip-
 
-      - name: Install Pre-Commit and Dependencies
+      - name: Install Python dependencies
         run: |
+          set -e
           python -m pip install --upgrade pip
-          pip install pre-commit
+          pip install -r requirements.txt
+          pip install -r requirements-dev.txt
+          pip install torch
+          pip install torch_geometric
 
       - name: Run Pre-Commit Checks
         run: pre-commit run --all-files --show-diff-on-failure

.pre-commit-config.yaml

@@ -3,7 +3,9 @@ repos:
     rev: v4.3.0
     hooks:
       - id: trailing-whitespace
+        exclude: '\.svg$|docs/source/_autosummary/'
       - id: end-of-file-fixer
+        exclude: '\.svg$|docs/source/_autosummary/'
       - id: check-yaml
       - id: check-added-large-files
 

README.md

@@ -8,7 +8,7 @@
 
 ## Welcome to BioNeuralNet Beta 0.1
 
-![BioNeuralNet Logo](/assets/BioNeuralNet_canva_logo_WB.png)
+![BioNeuralNet Logo](/assets/LOGO_WB.png)
 
 **Note:** This is a **beta version** of BioNeuralNet. It is under active development, and certain features
 may be incomplete or subject to change. Feedback and bug reports are highly encouraged to help us

bioneuralnet/analysis/__init__.py

@@ -1,3 +1,3 @@
-from correlation_analysis import Correlation
+from .correlation_analysis import Correlation
 
 __all__ = ["Correlation"]