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@Turku-BioImaging

Turku BioImaging

Turku BioImaging is a broad-based, interdisciplinary science and infrastructure umbrella that aims to unite bioimaging expertise in Finland.
Turku BioImaging

Welcome to Turku BioImaging! We are a multidisciplinary scientific organization, dedicated to promoting cutting-edge research in bioimaging. This GitHub organization is for our Image Data Services, where we provide image processing and analysis services to academics and industry partners.

Image Data Services

Turku BioImaging is a broad, interdisciplinary science community in Turku, Finland. We aim to promote research and education in bioimaging and provide the tools necessary for understanding complex biological systems.

For Industry Partners

We provide image analysis tools and services, built upon the established resources of Euro-Bioimaging Finland, tailored to meet the needs of industry users. If your company requires robust image analysis for research, quality control, or product development, we offer a range of solutions, from custom scripts to consultation on existing pipelines. We aim to deliver practical, efficient, and reliable analysis, helping you extract valuable information from your visual data.

Contact us

For inquiries, please email tbi-office@bioimaging.fi

Tools we use

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  1. ColonyArea ColonyArea Public

    ImageJ-plugin that performs standard analysis of colony formation assays conducted in 6- to 24-well dishes.

    ImageJ Macro 2 1

  2. stagetool-ui stagetool-ui Public

    Vue3 web interface for StageTool

    Vue

  3. 2025-spectral-analysis-of-maritime-communication-systems-andrei-morariu 2025-spectral-analysis-of-maritime-communication-systems-andrei-morariu Public

    Spectral analysis of maritime communication systems of vessel engine and control room, implemented in Python and Nextflow

    Python

  4. stem-xylem-traits-in-poplar-genotypes stem-xylem-traits-in-poplar-genotypes Public

    Code repository for image processing used in the published article

    Python

  5. signaling-downstream-of-tumor-stroma-interaction-regulates-mcc-apicobasal-polarity signaling-downstream-of-tumor-stroma-interaction-regulates-mcc-apicobasal-polarity Public

    Image processing source code for the paper "Signaling downstream of tumor-stroma interaction regulates mucinous colorectal carcinoma apicobasal polarity"

    Python

  6. 2024-silke-zoospore-tracking 2024-silke-zoospore-tracking Public

    Python

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