I am a Master's candidate in Biomedical Sciences (Biomedical Informatics track) at The Ohio State University, focusing on developing computational methods and analyzation for high-dimensional genomic data.
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🔭 I’m currently working on: Developing computational methods to decode intercellular signaling patterns from spatial transcriptomics via ligand-receptor interaction modeling.
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🌱 I’m currently exploring: Pathology foundation models applications in detecting sensence.
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👯 I’m looking to collaborate on: Open-source bioinformatics tool development and large-scale data analysis.
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💬 Ask me about:
- Single-cell & Spatial: Seurat, Scanpy, Squidpy, Trajectory Inference, Cell-cell Interaction.
- Bulk Omics: RNA-seq (DESeq2/edgeR), Proteomics (Differential Abundance), Pathway Enrichment (GSEA/GO).
- Pipelines: HPC server.
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📫 How to reach me: chen.13589@osu.edu
| Domain | Tools & Languages |
|---|---|
| Languages | Python , R , Bash |
| Single-cell & Spatial | Scanpy, Seurat, Squidpy |
| Bulk & Proteomics | DESeq2, ComplexHeatmap, Proteomics Analysis |
| Workflow & Cloud | Git |
| Statistics | Hypothesis Testing, Regression Analysis, Clustering, PCA |