Add support for layer=None to use AnnData.X directly #20
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Fixes TarikExner#17 - Update run_anndata_setup to accept Optional[str] for layer parameter - Modify DataHandlerAnnData and DataProviderAnnData to handle layer=None - Update evaluation functions (MAD and EMD) to support layer=None - Add comprehensive tests for layer=None functionality When layer=None is passed, the library now uses adata.X instead of requiring a named layer, improving memory efficiency and following AnnData conventions.
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Fixes #17
When layer=None is passed, the library now uses adata.X instead of requiring a named layer, improving memory efficiency and following AnnData conventions.
P.S full disclosure this is claude not really me - it seems about right but I don't have full understanding of the lib!