Skip to content

I/O: YAML, SIF, Excel export and the Standard-GEM git layout#3

Merged
edkerk merged 7 commits into
developfrom
feature/io
May 30, 2026
Merged

I/O: YAML, SIF, Excel export and the Standard-GEM git layout#3
edkerk merged 7 commits into
developfrom
feature/io

Conversation

@edkerk
Copy link
Copy Markdown
Member

@edkerk edkerk commented May 29, 2026

Model I/O on top of cobrapy: YAML aligned to cobra's standard plus geckopy's enzyme-constrained extension and RAVEN-only fields preserved into notes; SIF graphs for Cytoscape; RAVEN-style Excel export; and the Standard-GEM git-layout exporter.

Base: feature/foundation.

@edkerk edkerk changed the base branch from feature/foundation to develop May 30, 2026 00:01
@edkerk edkerk marked this pull request as ready for review May 30, 2026 00:02
@edkerk edkerk merged commit 8a28f0d into develop May 30, 2026
4 checks passed
@edkerk edkerk deleted the feature/io branch May 30, 2026 00:05
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant