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feat(io.yaml): typed model.ec via EcData; absorb legacy GECKO normalisations #12

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Merged
edkerk merged 3 commits into from
May 30, 2026
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feat(io.yaml): typed model.ec via EcData; absorb legacy GECKO normalisations #12

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cbe5f59
feat(io.yaml): typed model.ec via EcData; absorb legacy GECKO normali…
edkerk May 30, 2026
39adaf6
feat(io.ec_data): add EcData.validate + EcData.empty
edkerk May 30, 2026
db1df1f
fix(io.ec_data): satisfy ruff (UP037, B905, I001)
edkerk May 30, 2026
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7 changes: 5 additions & 2 deletions src/raven_python/io/__init__.py
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Original file line number Diff line number Diff line change
@@ -1,12 +1,15 @@
"""RAVEN-specific I/O: YAML (cobra + Metabolic Atlas / Human-GEM extensions), SIF,
Excel export, and the Standard-GEM ``model/<fmt>/…`` git layout.
"""RAVEN-specific I/O: YAML (cobra + Metabolic Atlas / Human-GEM extensions, plus
the GECKO ec-model substructure), SIF, Excel export, and the Standard-GEM
``model/<fmt>/…`` git layout.
"""
from raven_python.io.ec_data import EcData
from raven_python.io.excel import export_to_excel
from raven_python.io.git import export_for_git
from raven_python.io.sif import export_model_to_sif
from raven_python.io.yaml import read_yaml_model, write_yaml_model

__all__ = [
"EcData",
"export_for_git",
"export_model_to_sif",
"export_to_excel",
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