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fix consensus binning for contigs without profile #11

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fix consensus binning for contigs without profile #11

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6 changes: 6 additions & 0 deletions scripts/consensus_binning.py
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Original file line number Diff line number Diff line change
Expand Up @@ -109,6 +109,12 @@ def evaluate_non_binary_relationship(temp_smags,set_removed=set()):

# dispatch contigs to the most correlated mag, let's assign a contig to the best correlated mag
for contig,[mag1,mag2] in contig_to_mags.items() :
# skip contigs without profile data
if contig not in contig_profile:
if contig in cluster_to_contigs[mag1]:
cluster_to_contigs[mag1].remove(contig)
if contig in cluster_to_contigs[mag2]:
cluster_to_contigs[mag2].remove(contig)
# it may happen that everything is ambiguous
issue = [m for m in [mag1,mag2] if np.isnan(mag_profile[m]).sum()]
if issue:
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