Codemeta v4 daniel

.github/workflows/check.yml

@@ -8,7 +8,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Check out repository code
-        uses: actions/checkout@v3
+        uses: actions/checkout@v6
       - name: Setup R
         uses: r-lib/actions/setup-r@v2
       - name: Install dependencies
@@ -21,6 +21,6 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Check out repository code
-        uses: actions/checkout@v3
+        uses: actions/checkout@v6
       - name: Run aggregate.py
         run: python3 scripts/aggregate.py

.github/workflows/codespell.yml

@@ -18,7 +18,7 @@ jobs:
 
     steps:
       - name: Checkout
-        uses: actions/checkout@v4
+        uses: actions/checkout@v6
       - name: Annotate locations with typos
         uses: codespell-project/codespell-problem-matcher@v1
       - name: Codespell

codemeta_all.jsonld

@@ -0,0 +1,156 @@
+{
+  "@context": {
+      "type": "@type",
+      "id": "@id",
+      "schema":"https://schema.org/",
+      "codemeta": "https://w3id.org/codemeta/terms/",
+      "Organization": {"@id": "schema:Organization"},
+      "ContactPoint": { "@id": "schema:ContactPoint" },
+      "Person": {"@id": "schema:Person"},
+      "Review": {"@id": "schema:Review"},
+      "Role": {"@id": "schema:Role"},
+      "SoftwareSourceCode": {"@id": "schema:SoftwareSourceCode"},
+      "SoftwareApplication": {"@id": "schema:SoftwareApplication"},
+      "WebAPI": {"@id": "schema:WebAPI"},
+      "WebApplication": {"@id": "schema:WebApplication"},
+      "Text": {"@id": "schema:Text"},
+      "URL": {"@id": "schema:URL"},
+      "address": { "@id": "schema:address"},
+      "affiliation": { "@id": "schema:affiliation"},
+      "applicationCategory": { "@id": "schema:applicationCategory"},
+      "applicationSubCategory": { "@id": "schema:applicationSubCategory"},
+      "citation": { "@id": "schema:citation"},
+      "codeRepository": { "@id": "schema:codeRepository", "@type": "@id"},
+      "contactPoint": { "@id": "schema:contactPoint" },
+      "contactType": { "@id": "schema:contactType" },
+      "contributor": { "@id": "schema:contributor", "@container": "@list" },
+      "copyrightHolder": { "@id": "schema:copyrightHolder"},
+      "copyrightYear": { "@id": "schema:copyrightYear"},
+      "dateCreated": {"@id": "schema:dateCreated", "@type": "schema:Date" },
+      "dateModified":  {"@id": "schema:dateModified", "@type": "schema:Date" },
+      "datePublished":  {"@id": "schema:datePublished", "@type": "schema:Date" },
+      "description": { "@id": "schema:description"},
+      "downloadUrl": { "@id": "schema:downloadUrl", "@type": "@id"},
+      "email": { "@id": "schema:email"},
+      "editor": { "@id": "schema:editor"},
+      "encoding": { "@id": "schema:encoding"},
+      "endDate": { "@id": "schema:endDate"},
+      "familyName": { "@id": "schema:familyName"},
+      "fileFormat": { "@id": "schema:fileFormat"},
+      "fileSize": { "@id": "schema:fileSize"},
+      "funder": { "@id": "schema:funder"},
+      "funding": { "@id": "schema:funding"},
+      "givenName": { "@id": "schema:givenName"},
+      "hasPart": { "@id": "schema:hasPart" },
+      "identifier": { "@id": "schema:identifier"},
+      "installUrl": { "@id": "schema:installUrl", "@type": "@id"},
+      "isAccessibleForFree": { "@id": "schema:isAccessibleForFree"},
+      "isPartOf":  { "@id": "schema:isPartOf", "@type": "@id"},
+      "keywords": { "@id": "schema:keywords"},
+      "license": { "@id": "schema:license", "@type": "@id"},
+      "maintainer": { "@id": "schema:maintainer" },
+      "memoryRequirements": { "@id": "schema:memoryRequirements"},
+      "name": { "@id": "schema:name"},
+      "operatingSystem": { "@id": "schema:operatingSystem"},
+      "permissions": { "@id": "schema:permissions"},
+      "processorRequirements": { "@id": "schema:processorRequirements"},
+      "producer": { "@id": "schema:producer"},
+      "programmingLanguage": { "@id": "schema:programmingLanguage"},
+      "provider": { "@id": "schema:provider"},
+      "publisher": { "@id": "schema:publisher"},
+      "relatedLink": { "@id": "schema:relatedLink", "@type": "@id"},
+      "review": { "@id": "schema:review", "@type": "@id" },
+      "reviewAspect": { "@id": "schema:reviewAspect" },
+      "reviewBody": { "@id": "schema:reviewBody" },
+      "releaseNotes": { "@id": "schema:releaseNotes"},
+      "roleName": { "@id": "schema:roleName"},
+      "runtimePlatform": { "@id": "schema:runtimePlatform"},
+      "sameAs": { "@id": "schema:sameAs", "@type": "@id"},
+      "softwareHelp": { "@id": "schema:softwareHelp"},
+      "softwareRequirements": { "@id": "schema:softwareRequirements"},
+      "softwareVersion": { "@id": "schema:softwareVersion"},
+      "sponsor": { "@id": "schema:sponsor"},
+      "startDate": { "@id": "schema:startDate"},
+      "storageRequirements": { "@id": "schema:storageRequirements"},
+      "supportingData": { "@id": "schema:supportingData"},
+      "targetProduct": { "@id": "schema:targetProduct"},
+      "url": { "@id": "schema:url"},
+      "version": { "@id": "schema:version"},
+      "author": { "@id": "schema:author", "@container": "@list" },
+      "alternateName": { "@id": "schema:alternateName" },
+      "featureList": { "@id": "schema:featureList"},
+      "creditText": { "@id": "schema:creditText" },
+      "archivedAt": { "@id": "schema:archivedAt", "@type": "@id" },
+      "continuousIntegration": { "@id": "codemeta:continuousIntegration", "@type": "@id"},
+      "buildInstructions": { "@id": "codemeta:buildInstructions", "@type": "@id"},
+      "developmentStatus": { "@id": "codemeta:developmentStatus", "@type": "@id"},
+      "embargoEndDate": { "@id":"codemeta:embargoEndDate", "@type": "schema:Date" },
+      "readme": { "@id":"codemeta:readme", "@type": "@id" },
+      "issueTracker": { "@id":"codemeta:issueTracker", "@type": "@id" },
+      "referencePublication": { "@id": "codemeta:referencePublication", "@type": "@id"},
+      "hasSourceCode": { "@id": "codemeta:hasSourceCode", "@type": "@id"},
+      "isSourceCodeOf": { "@id": "codemeta:isSourceCodeOf", "@type": "@id"}
+  },
+   "@graph": [
+    {
+      "@id": "codemeta:buildInstructions",
+      "@type": "rdf:Property",
+      "rdfs:comment": "A link to installation instructions or build documentation.",
+      "rdfs:label": "buildInstructions",
+      "schema:domainIncludes": [
+        {
+          "@id": "schema:SoftwareApplication"
+        },
+        {
+          "@id": "schema:SoftwareSourceCode"
+        }
+      ],
+      "schema:rangeIncludes": 
+      [
+        {
+        "@id": "schema:URL"
+        },
+        {
+        "@id": "schema:CreativeWork"
+        }
+      ]
+    },
+    {
+      "@id": "codemeta:contIntegration",
+      "@type": "rdf:Property",
+      "rdfs:comment": "A link to continuous integration service.",
+      "rdfs:label": "contiIntegration",
+      "schema:domainIncludes": [
+        {
+          "@id": "schema:SoftwareApplication"
+        },
+        {
+          "@id": "schema:SoftwareSourceCode"
+        }
+      ],
+      "schema:rangeIncludes": {
+        "@id": "schema:URL"
+      },
+      "schema:supersededBy": {
+        "@id": "codemeta:continuousIntegration"
+      }
+    },
+    {
+      "@id": "codemeta:continuousIntegration",
+      "@type": "rdf:Property",
+      "rdfs:comment": "A link to continuous integration service.",
+      "rdfs:label": "continuousIntegration",
+      "schema:domainIncludes": [
+        {
+          "@id": "schema:SoftwareApplication"
+        },
+        {
+          "@id": "schema:SoftwareSourceCode"
+        }
+      ],
+      "schema:rangeIncludes": {
+        "@id": "schema:URL"
+      }
+    }
+  ]
+}

crosswalks/GitLab.csv

@@ -0,0 +1,74 @@
+Property,GitLab
+codeRepository,web_url
+programmingLanguage,/projects/:id/languages
+review,
+runtimePlatform,
+targetProduct,
+applicationCategory,
+applicationSubCategory,
+downloadUrl,
+fileSize,
+installUrl,
+memoryRequirements,
+operatingSystem,
+permissions,permissions
+processorRequirements,
+releaseNotes,
+softwareHelp,
+softwareRequirements,
+softwareVersion,/projects/:id/releases/:name
+storageRequirements,
+supportingData,
+author,creator_id
+citation,
+contributor,/projects/:id/members/:id
+copyrightHolder,
+copyrightYear,
+dateCreated,created_at
+dateModified,updated_at
+datePublished,
+editor,
+encoding,
+fileFormat,
+funder,
+keywords,topics / tag_list
+license,
+producer,
+provider,namespace.name
+publisher,
+sponsor,
+version,
+isAccessibleForFree,visibility
+isPartOf,
+hasPart,
+position,
+description,description
+identifier,id
+name,name
+sameAs,
+url,http_url_to_repo
+relatedLink,wiki_enabled
+givenName,/projects/:id/members/all/:id/name
+familyName,/projects/:id/members/all/:id/name
+email,/projects/:id/members/all/:id/public_email
+affiliation,
+identifier,/projects/:id/members/all/:id
+name,/projects/:id/members/all/:id/username / /projects/:id/members/all/:id/name
+address,/projects/:id/members/all/:id/web_url
+reviewAspect,
+reviewBody,
+endDate,/projects/:id/members/all/:id/expires_at
+roleName,
+startDate,/projects/:id/members/all/:id/created_at
+softwareSuggestions,
+maintainer,
+continuousIntegration,
+buildInstructions,ci_config_path
+developmentStatus,archived
+embargoEndDate,
+funding,
+issueTracker,_links.issues / web_url/-/issues
+referencePublication,
+readme,readme_url
+hasSourceCode,
+isSourceCodeOf,

scripts/aggregate.py

@@ -1,17 +1,18 @@
-#!/usr/bin/env python3
-import os
 import csv
+from pathlib import Path
 
-REPO_DIR = os.path.join(os.path.dirname(__file__), '..')
 
-PROP_DESC_PATH = os.path.join(REPO_DIR, 'properties_description.csv')
+REPO_DIR = Path(__file__).parent.parent
+
+
+PROP_DESC_PATH = REPO_DIR / "properties_description.csv"
 """The CSV file where the leftmost columns of the aggregate crosswalk table
 are (parent type, property name, type, and description."""
 
-SOURCE_DIR = os.path.join(REPO_DIR, 'crosswalks')
+SOURCE_DIR = REPO_DIR / "crosswalks"
 """The directories where all other .csv files are."""
 
-DEST_FILENAME = os.path.join(REPO_DIR, 'crosswalk.csv')
+DEST_FILENAME = REPO_DIR / "crosswalk.csv"
 """The path/name of the file where the aggregate crosswalk table is
 written."""
 
@@ -39,7 +40,7 @@ def read_terms(prop_desc, filename):
     in properties_description.csv."""
 
     # Read rows from a translation table in crosswalks.
-    with open(os.path.join(SOURCE_DIR, filename)) as fd:
+    with open(SOURCE_DIR / filename) as fd:
         rows = list(csv.reader(fd))
 
     # Split the two rows of the translation table.
@@ -54,7 +55,7 @@ def read_terms(prop_desc, filename):
 def list_crosswalks():
     """Returns the list of crosswalk files by auto-discovering them from the
     crosswalk/ directory."""
-    return sorted(os.listdir(SOURCE_DIR))
+    return sorted(SOURCE_DIR.glob("*.csv"))
 
 def aggregate():
     """Get all columns from properties_description.csv and files in
@@ -67,22 +68,14 @@ def aggregate():
     # Get the other columns, one per .csv file in crosswalks/
     columns = []
     for filename in list_crosswalks():
-        if filename.endswith('.csv'):
-            columns.append(read_terms(prop_desc, filename))
+        columns.append(read_terms(prop_desc, filename))
 
     return prop_desc + columns
 
-def rm_file(filename):
-    """Removes a file if it exists, does nothing otherwise."""
-    try:
-        os.unlink(filename)
-    except FileNotFoundError:
-        pass
-
 def write_aggregate(aggregate_columns):
     """Writes the aggregated crosswalk table."""
     rows = rows_from_columns(aggregate_columns)
-    rm_file(DEST_FILENAME)
+    DEST_FILENAME.unlink(missing_ok=True)
     with open(DEST_FILENAME, 'a') as fd:
         writer = csv.writer(fd, lineterminator='\n')
         writer.writerows(rows)

scripts/split.py

@@ -1,46 +1,37 @@
-#!/usr/bin/env python3
-
-import os
 import csv
-from pprint import pprint
+from pathlib import Path
+
 
+REPO_DIR = Path(__file__).parent.parent
 
-REPO_DIR = os.path.join(os.path.dirname(__file__), '..')
 
-PROP_DESC_PATH = os.path.join(REPO_DIR, 'properties_description.csv')
+PROP_DESC_PATH = REPO_DIR / "properties_description.csv"
 """The CSV file where the leftmost columns of the aggregate crosswalk table
 are (parent type, property name, type, and description."""
 
-SOURCE_DIR = os.path.join(REPO_DIR, 'crosswalks')
+SOURCE_DIR = REPO_DIR / "crosswalks"
 """The directories where all other .csv files are."""
 
-CROSSWALK_PATH = os.path.join(REPO_DIR, 'crosswalk.csv')
+CROSSWALK_PATH = REPO_DIR / "crosswalk.csv"
 """The path/name of the file where the aggregate crosswalk table is
 written."""
 
 
-def rm_file(filename):
-    """Removes a file if it exists, does nothing otherwise."""
-    try:
-        os.unlink(filename)
-    except FileNotFoundError:
-        pass
-
 with open(CROSSWALK_PATH) as fd:
     reader = csv.reader(fd)
     lines = list(reader)
 cols = list(zip(*lines))
 props = cols[1]
 for col in cols[4:]:
     col_name = col[0]
-    filename = os.path.join(SOURCE_DIR, col_name + '.csv')
-    rm_file(filename)
+    filename = SOURCE_DIR / f"{col_name}.csv"
+    filename.unlink(missing_ok=True)
     with open(filename, 'a') as fd:
         writer = csv.writer(fd)
         for (prop, trans) in zip(props, col):
             writer.writerow((prop, trans))
 
-rm_file(PROP_DESC_PATH)
+PROP_DESC_PATH.unlink(missing_ok=True)
 with open(PROP_DESC_PATH, 'a') as fd:
     writer = csv.writer(fd, lineterminator='\n')
     prop_desc = zip(*cols[0:4])