Remove exec magic from sasdata.quantities.units#204

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rprospero wants to merge 979 commits into

refactor_24from

units_without_exec

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Commits on Mar 16, 2026

Add equality testing for quantities

rprospero
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krzywon
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More tests for quantities

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Fix meshmerge calculation

rprospero
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Ruff format.

jamescrake-merani
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This comment was repetitive.

jamescrake-merani
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Ruff format.

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Function to guess the dataset type.

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Function for loading a file with default params.

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Ruff format.

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Remove imports ruff is complaining aren't used.

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Added a test to make sure 2d data gets read right.

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Makes sure the dataset type gets guessed.

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Use basename for sasdata ascii name.

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Be consistent with how basename is called.

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Move comment to avoid odd Ruff format.

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Move comment again.

jamescrake-merani
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Fixed test.

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Created an import metadata function.

jamescrake-merani
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Remove the old function.

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Use the new import function.

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Remove these imports.

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Need to use keywords for this dataclass.

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Import the mumag data for testing.

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Added a case for mumag data.

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Added test for loading ascii data with metadata.

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Use params filenames not just filenames.

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Fixed column parameters.

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Doh. Missing commas on filename list.

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Roll the raw metadata into the metadata object.

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Need to fill in all the parameters.

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Forgot process :P

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Consider both of these.

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Combine both metadata so we go through all of them

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Raw metadata is in lists.

jamescrake-merani
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I don't know what these decimals were.

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Start implementing ModellingRequirements

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Start testing modelling requirements

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Start adding better tests for ModellingRequirements

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Flip order of parameters on compose

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Don't assume that Sesans includes smear

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Enable left composition by null model

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support right addition of NullModel

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Allow preprocess and postprocess steps

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Start performing Hankel transform for SESANS

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Ignore slit smearing before SESANS

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Pull sesans metadata from file

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Add unit test for Hankel transform

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Fix units with error calculation

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χ² squared based test

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Code Review Suggestions

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Fix up rename in compose

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Fix uncertainty in SESANS parser

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Update SESANS units in unit_kinds

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Applies auto fixes for ruff rule F401

DrPaulSharp
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Applies auto fixes for ruff rule E714

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Applies auto fixes for ruff rule F541

DrPaulSharp
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Test should fail when there's no data.

James Crake-Merani
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Added a get default unit function.

James Crake-Merani
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Use the new get default unit function.

James Crake-Merani
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Pass in the unit group as well.

James Crake-Merani
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Return value if it isn't None.

James Crake-Merani
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Set the dataset type properly.

James Crake-Merani
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Expect 2D test to fail.

James Crake-Merani
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Use Quantity in models

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Don't use a quantity for model post processing

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Basic Pinhole model

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Refactor pinhole tests

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Fix radius bug in smearing

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More realisting δq

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Combine Smearing and Sesans tests

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Define model metadata in constructor

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Better testing range for pinhole

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Add slit smearing

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Remove old commented code

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Vectorise slit calculation

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Check combination of slit models

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Decrease logical depth of linear_extrapolation

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Decrease logical depth of slit_resolution

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Decrease logical depth of geometric_extrapolation

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Apply PR changes

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Fixes ruff linting errors (#140)

DrPaulSharp
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Adds Pyupgrade (UP) ruleset and rules SIM118 & SIM300 to ruff linter (#144)

DrPaulSharp
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Applies fixes for isort (I) ruff ruleset (#146)

DrPaulSharp
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Fixes whitespace errors

DrPaulSharp
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Fix hours, days, and years

rprospero
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Add command for explicitly formatting quantity units

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Add test harness for serialisation

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Add first real json property

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Export data type

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Add mask and model requirements

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Start exporting metadata

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Start adding sample details

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Export process metadata

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Export Instrument and Raw metadata

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Support exporting Quantities

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Remove unneeded default calls

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Start writing decoder

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Correctly export sample temperature

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Fix notes nodes type

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Decode metadata from json

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Use proper bytes for numpy serialisation

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Fix historical unit errors

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Parse MetaNode

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Use .json extension for JSON files

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Establish settings for ruff and pycodestyle

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Fix formatting

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[pre-commit.ci lite] apply automatic fixes for ruff linting errors

pre-commit-ci-lite[bot]
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Adds main check to "transforms.py"

DrPaulSharp
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Start descending

rprospero
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Convert tail call recursion to loop

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Enumerate keys for access

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Descend into dicts

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Fix access to dict items

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Fix formatting and doctstrings

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Enable tag collection

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Fix PR Comments

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Formatting fixes

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Start encoding

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Test saving with XML files

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More tests for sample metadata

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Switch to safe asserts

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Start serialising process

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Start serialising process

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Write instrument tests

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Start testing g5 round trip

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Fix *most* of the round trip issues

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Everything passes if we ignore raw

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Start trying to serialise raw data

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Simplify test setup

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[pre-commit.ci lite] apply automatic fixes for ruff linting errors

pre-commit-ci-lite[bot]
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Attach metadata to every entry

rprospero
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Add comments to as_h5

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Fix up file handling of test

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[pre-commit.ci lite] apply automatic fixes for ruff linting errors

pre-commit-ci-lite[bot]
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Remove debugging print

rprospero
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Respond to PR suggestions

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Adds local pre-commit hook for ruff linting auto fixes

DrPaulSharp
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Handle bytes type object in units parser

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Fix underline length in metadata export

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Fix import of actual sasdata

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Tweak json handling

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Fix most of HDF file loading

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Properly save multidimensional data

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Fix parsing of exception in test

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Perform serialisation test on ALL example data

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Export json

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[pre-commit.ci lite] apply automatic fixes for ruff linting errors

pre-commit-ci-lite[bot]
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Fix json export of data objects

rprospero
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Fixes to json export

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Respond to PR suggestions

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Use file name as file id

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157 refactor design documentation (#158)

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Redesign tests (#155)

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Mark dataload test for faster turnaround

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Ruff code formatting

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Fix up HDF Test case

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Start moving HDF tests into James test framework

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Start moving XML into James test framework

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Move round trip testing into main framework

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Move json testing into test framework

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Eliminate old testing detritus

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Start on Sesans testing

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[pre-commit.ci lite] apply automatic fixes for ruff linting errors

pre-commit-ci-lite[bot]
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Modifies autogen code to match ruff rules

DrPaulSharp
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added rpms and ran to rebuild tables

paulneves77
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ran ruff fixes

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added 3D datatype and added Qz generalizations where obvious

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added first attempt at ND binner which can take in I(x,y,z,u,v,...) and rebin to an N dimensional regular grid

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added rebin and sketch of inplied qz for postprocessing

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updated rebin, added rpm to units, and working on testing readers

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the ND xubpixel binning appears to be working, and made some updates to the temporary hdf5 reader

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corrected errors in qz calculator, cleaned up test_hdf5_reader, improved NDrebin local testing

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corrected errors in qz calculator, cleaned up test_hdf5_reader, improved NDrebin local testing

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started cleaning up for pull request

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fixed temp_hdf5_reader to be slightly more compliant with NXcanSAS standards (now looks directly at canSAS_class instead of the group name. This is because the group name is allowed to be anything,…

paulneves77
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fixed apertures and run from none to empty list if missing, and fixed raw data loading if present

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[pre-commit.ci lite] apply automatic fixes for ruff linting errors

pre-commit-ci-lite[bot]
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cleaned up code based on Jeff Kryzwon's suggestions and added test case for deduce_qz

paulneves77
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removed NDrebin from this branch.

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implemented minor cleanups to code

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fixed a few bugs and cleaned up more

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added raw back to metadata

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fixed some bugs with importing sasdata/test/sasdataloader/data/simpleexamplefile.h5. Also added support for when the NX_class attribute has a canSAS_class name. Also fixed bug when no instrument, s…

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fixed the collimation cansas_class attribute in the nxcansas_1Dand2D_multisasentry_multisasdata.h5, nxcansas_1Dand2D_multisasdata.h5, and nxcansas_1Dand2D_multisasentry.h5 test data files

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removed local path references, removed spurious units.py

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moved duplicate code in parse_quantity to a call of parse_float, changed name of parse_float_first to parse_float

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fixed minor error in reference output for nxcansas_1Dand2D_multisasdata and nxcansas_1Dand2D_multisasentry where the detector distance was read wrong because of the difference between node.astype(f…

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brought over NDrebin from refactor_24_3D branch

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updated NDrebin a bunch and also added NDrebin testing

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[pre-commit.ci lite] apply automatic fixes for ruff linting errors

pre-commit-ci-lite[bot]
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added note on using NDrebin for M dimensional integration

paulneves77
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first pass at rebasing NDrebin to a class

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second pass at cleaning up NDrebin class

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NDrebin class ready for testing

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added unit testing for NDrebin

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removed temporary testing from NDrebin.py

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cleaned up NDrebin, removed old function, added documentation

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refactor NDRebin._build_limits to pass codescene review. vectorized and removed for loops and most conditional logic

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fixed bug in _build_limits

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indented code block, clarified non-vector comment, fixed typo, removed return in NDRebin __call__

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indented code block, clarified non-vector comment, fixed typo, removed return in NDRebin __call__

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Update date format in refactor roadmap

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Basic test harness for names

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Base 62 encode the hash for shorter names

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Name info in unique id for NamedQuantity

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Ruff formatting

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Properly attach run title and number to quantity information

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Make the name a part of all quantities

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Ensure that xml imports also include a proper name unique id

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Ensure ASCII reader generates unique_id for data quantities

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Refactor our id_header

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[pre-commit.ci lite] apply automatic fixes for ruff linting errors

pre-commit-ci-lite[bot]
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Minor formatting fixes

rprospero
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Remove debugging print statements

rprospero
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Refactor operations (#184)

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Update refactor roadmap

DrPaulSharp
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Adds trig and exp operations (#186)

DrPaulSharp
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Merge remote-tracking branch 'origin/refactor_24' into refactor_24
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