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Update RO-Crate context to use canonical Bioschemas prefix #542

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Update RO-Crate context to use canonical Bioschemas prefix #542

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e204360
update schema-context script & regen context
elichad May 20, 2026
b139b5c
update description of bioschemas terms in spec
elichad May 20, 2026
8f3fecf
update profile crate & regen preview
elichad May 20, 2026
3918a26
update changelog
elichad May 20, 2026
ca164b3
improves changelog readability
elichad May 20, 2026
3d23061
add issue number
elichad May 20, 2026
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11 changes: 11 additions & 0 deletions docs/_specification/1.3-DRAFT/appendix/changelog.md
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Expand Up @@ -28,6 +28,17 @@ excerpt: List of changes in releases of this specifications

# APPENDIX: Changelog {#changelog}

* RO-Crate 1.3.0
* Updated the Bioschemas namespace to `https://bioschemas.org/terms/` for all types and properties (previously `https://bioschemas.org/` for types and `https://bioschemas.org/properties` for properties). This change affects 4 terms in the [JSON-LD context](../ro-crate-metadata.json): `ComputationalWorkflow`, `FormalParameter`, `input`, and `output`. [#529](https://github.com/ResearchObject/ro-crate/issues/529)

| Term | Previous URI | New URI |
| --- | --- | --- |
| ComputationalWorkflow |`https://bioschemas.org/ComputationalWorkflow` | `https://bioschemas.org/terms/ComputationalWorkflow` |
| FormalParameter | `https://bioschemas.org/FormalParameter` | `https://bioschemas.org/terms/FormalParameter` |
| input |`https://bioschemas.org/properties/input` | `https://bioschemas.org/terms/input` |
| output |`https://bioschemas.org/properties/output` | `https://bioschemas.org/terms/output` |


* RO-Crate 1.2.0
* Clarified that the [RO-Crate Metadata Descriptor MUST have `@id` of `ro-crate-metadata.json`](../root-data-entity#ro-crate-metadata-descriptor) by removing conflicting statements elsewhere in the specification [#365](https://github.com/ResearchObject/ro-crate/pull/365)
* Updated the Bioschemas namespace for properties from `https://bioschemas.org/ComputationalWorkflow#` to `https://bioschemas.org/properties/`. This change affects only the `input` and `output` properties in the [JSON-LD context](../ro-crate-metadata.json).
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8 changes: 4 additions & 4 deletions docs/_specification/1.3-DRAFT/context.jsonld
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Expand Up @@ -2874,10 +2874,10 @@
"RepositoryCollection": "http://pcdm.org/models#Collection",
"RepositoryObject": "http://pcdm.org/models#Object",
"RepositoryFile": "http://pcdm.org/models#File",
"ComputationalWorkflow": "https://bioschemas.org/ComputationalWorkflow",
"input": "https://bioschemas.org/properties/input",
"output": "https://bioschemas.org/properties/output",
"FormalParameter": "https://bioschemas.org/FormalParameter",
"ComputationalWorkflow": "https://bioschemas.org/terms/ComputationalWorkflow",
"input": "https://bioschemas.org/terms/input",
"output": "https://bioschemas.org/terms/output",
"FormalParameter": "https://bioschemas.org/terms/FormalParameter",
"wasDerivedFrom": "http://www.w3.org/ns/prov#wasDerivedFrom",
"importedFrom": "http://purl.org/pav/importedFrom",
"importedOn": "http://purl.org/pav/importedOn",
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10 changes: 5 additions & 5 deletions docs/_specification/1.3-DRAFT/metadata.md
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Expand Up @@ -135,12 +135,12 @@ From the [IANA link relations] registry:

These terms are being proposed by [Bioschemas profile ComputationalWorkflow 1.0-RELEASE][ComputationalWorkflow profile 1.0] and [FormalParameter 1.0-RELEASE][FormalParameter profile 1.0] to be integrated into Schema.org:

* `ComputationalWorkflow` mapped to <https://bioschemas.org/ComputationalWorkflow>
* `FormalParameter` mapped to <https://bioschemas.org/FormalParameter>
* `input` mapped to <https://bioschemas.org/properties/input>
* `output` mapped to <https://bioschemas.org/properties/output>
* `ComputationalWorkflow` mapped to <https://bioschemas.org/terms/ComputationalWorkflow>
* `FormalParameter` mapped to <https://bioschemas.org/terms/FormalParameter>
* `input` mapped to <https://bioschemas.org/terms/input>
* `output` mapped to <https://bioschemas.org/terms/output>

{% include callout.html type="note" content="In this specification the proposed Bioschemas terms use the temporary <https://bioschemas.org/> namespace; future releases of RO-Crate may reflect mapping to the <http://schema.org/> namespace." %}
{% include callout.html type="note" content="In version 1.3 of this specification the proposed Bioschemas terms use the <https://bioschemas.org/terms/> namespace; previous versions 1.1 and 1.2 used the temporary <https://bioschemas.org/> namespace. Future releases of RO-Crate may reflect mapping to the <http://schema.org/> namespace." %}

To support geometry in [Places](contextual-entities#places), these terms from the [GeoSPARQL ontology]:

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