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dataset: DepMap#70

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tristan-f-r wants to merge 107 commits into
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dataset-depmap
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dataset: DepMap#70
tristan-f-r wants to merge 107 commits into
mainfrom
dataset-depmap

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@tristan-f-r tristan-f-r commented Mar 18, 2026 •
edited by ntalluri
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@tristan-f-r tristan-f-r added dataset Mutating datasets in any way. blocked-by-other-pr For PRs that depend on other PRs. labels Mar 18, 2026
@tristan-f-r tristan-f-r mentioned this pull request Mar 18, 2026
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tristan-f-r and others added 2 commits March 18, 2026 16:54
@tristan-f-r @ntalluri
docs: suggestions from review
4b524bc 
Co-authored-by: Neha Talluri <78840540+ntalluri@users.noreply.github.com>
@tristan-f-r
docs: more comments, refactor: mv function out of Snakefile
69fda05
ntalluri
ntalluri reviewed Mar 19, 2026
View reviewed changes
Comment thread datasets/depmap/README.md
ntalluri added 25 commits May 13, 2026 11:03
@ntalluri
update can/cna to be copy_number_alteraction and this should also all…
488a068 
… work now
@ntalluri
moved preprocess scripts and added id mapping and interactome
feb0372
@ntalluri
precommit
dbb66d2
@ntalluri
add a default cna word to typos, revert back to using cna
661de80
@ntalluri
clean up
ca68fd3
@ntalluri
still needs to be fixed
818177f
@ntalluri
add in new interactome
372fa68
@ntalluri
update the deduplicate tool function, remove normalize function and b…
5276687 
…e direct
@ntalluri
remove concept of latest
3006983
@ntalluri
precommit
3f69499
@ntalluri
fix tools test
7595652
@ntalluri
cleanup
1f0ca12
@ntalluri
precommit
78c0adf
@ntalluri
add todo
e682f09
@ntalluri
Merge branch 'egfr-and-infrastructure' into dataset-depmap
f2ce5bb
@ntalluri
precommit
7a0f0df
@ntalluri
Refactoring input_nodes script
ca86217
@ntalluri
update trim_input_nodes.py, it was an & and it needed to be an |
230a765
@ntalluri
update comment and precommit
b0a3165
@ntalluri
Merge branch 'egfr-and-infrastructure' into dataset-depmap
824624c
@ntalluri
actually merge branch
ec74351
@ntalluri
add gs nodes, update input_nodes, update interactome
6029cae
@ntalluri
remove all other datasets except egfr
c17703d
@ntalluri
update snakefile to check for all cell lines data
5c591be
@ntalluri
adding more default words for precommit and typos to ignore
9a2964c
ntalluri
ntalluri reviewed May 15, 2026
View reviewed changes
Comment thread datasets/depmap/Snakefile Outdated
ntalluri
ntalluri reviewed May 15, 2026
View reviewed changes
Comment thread datasets/depmap/Snakefile Outdated
ntalluri
ntalluri reviewed May 15, 2026
View reviewed changes
Comment thread datasets/depmap/Snakefile Outdated
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