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Feat/annotation management system#136

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sam4coding wants to merge 5 commits intoPytorchConnectomics:mainfrom
sam4coding:feat/annotation-management-system
Open

Feat/annotation management system#136
sam4coding wants to merge 5 commits intoPytorchConnectomics:mainfrom
sam4coding:feat/annotation-management-system

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@sam4coding sam4coding commented Mar 26, 2026

Title: feat: integrate annotation management system and align with upstream refactoring

Description:
This PR introduces the Project Manager module for handling large-scale scientific image annotation tasks. It also includes critical fixes to align the codebase with the recent upstream/main refactoring (specifically the sunset synanno changes).

Key Changes:

Module Integration: Added ProjectManager for task distribution, tracking, and high-priority assignments.

Upstream Alignment: * Cleaned up deprecated component references (WorkflowSelector, ProofReading, WormErrorHandling, EHTool) following the upstream synanno sunset.

    Reorganized view directory structures to match the new official module layout.

Bug Fixes: * Resolved CORSMiddleware configuration conflicts in server_api/main.py.

    Fixed module import paths in Views.js and MaskProofreading.js caused by directory restructuring.

Backend Support: Updated the API server to handle dynamic task queries and JSON-based persistence.

Verification:

npm run build passes successfully.

python3 -m py_compile verifies backend syntax.

Manual test: Verified ProjectManager displays tasks and correctly handles assignee filtering.

…nectomics#125)

- Implemented Login UI and Auth context with localStorage persistence.
- Added Admin/Worker role-based view gating.
- Integrated mock data for 19 real volumes from cluster export.
- Resolved merge conflicts with upstream/main and handled WorkflowSelector sunset.
…nectomics#125)

- Implemented Login UI and Auth context with localStorage persistence.
- Added Admin/Worker role-based view gating.
- Integrated mock data for 1000 volumes (real data ingestion pending).
- Resolved merge conflicts with upstream/main.
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