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clean up tdt warnings and badge cleanup #1138

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Merged
samuelgarcia merged 3 commits into from
Jul 27, 2022
Merged

clean up tdt warnings and badge cleanup #1138

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0f956e0
clean up tdt warnings
JuliaSprenger Jul 15, 2022
81f77ab
fix test badges in Readme
JuliaSprenger Jul 15, 2022
5d41388
remove outdated travis badge
JuliaSprenger Jul 15, 2022
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10 changes: 5 additions & 5 deletions README.rst
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Original file line number Diff line number Diff line change
Expand Up @@ -31,12 +31,12 @@ A project with similar aims but for neuroimaging file formats is `NiBabel`_.
Code status
-----------

.. image:: https://travis-ci.org/NeuralEnsemble/python-neo.png?branch=master
:target: https://travis-ci.org/NeuralEnsemble/python-neo
:alt: Core Unit Test Status (TravisCI)
.. image:: https://github.com/NeuralEnsemble/python-neo/actions/workflows/full-test.yml/badge.svg?event=push&branch=master
.. image:: https://github.com/NeuralEnsemble/python-neo/actions/workflows/core-test.yml/badge.svg?event=push&branch=master
:target: https://github.com/NeuralEnsemble/python-neo/actions?query=event%3Apush+branch%3Amaster
:alt: IO Unit Test Status (Github Actions)
:alt: Core Test Status (Github Actions)
.. image:: https://github.com/NeuralEnsemble/python-neo/actions/workflows/io-test.yml/badge.svg?event=push&branch=master
:target: https://github.com/NeuralEnsemble/python-neo/actions?query=event%3Apush+branch%3Amaster
:alt: IO Test Status (Github Actions)
.. image:: https://coveralls.io/repos/NeuralEnsemble/python-neo/badge.png
:target: https://coveralls.io/r/NeuralEnsemble/python-neo
:alt: Unit Test Coverage
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7 changes: 6 additions & 1 deletion neo/rawio/tdtrawio.py
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Expand Up @@ -179,6 +179,7 @@ def _parse_header(self):
for seg_index in range(nb_segment)} # key = seg_index then group_id

keep = info_channel_groups['TankEvType'] == EVTYPE_STREAM
missing_sev_channels = []
for stream_index, info in enumerate(info_channel_groups[keep]):
self._sig_sample_per_chunk[stream_index] = info['NumPoints']

Expand Down Expand Up @@ -252,7 +253,7 @@ def _parse_header(self):

# in case non or multiple sev files are found for current stream + channel
if len(sev_filename) != 1:
warnings.warn(f'Could not identify sev file for channel {chan_id}.')
missing_sev_channels.append(chan_id)
sev_filename = None

if (sev_filename is not None) and sev_filename.exists():
Expand All @@ -269,6 +270,10 @@ def _parse_header(self):
offset = 0.
signal_channels.append((chan_name, str(chan_id), sampling_rate, dtype,
units, gain, offset, stream_id))

if missing_sev_channels:
warnings.warn(f'Could not identify sev files for channels {missing_sev_channels}.')

signal_streams = np.array(signal_streams, dtype=_signal_stream_dtype)
signal_channels = np.array(signal_channels, dtype=_signal_channel_dtype)

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