Skip to content

Sync metadata#14

Merged
ssjunnebo merged 13 commits intoNationalGenomicsInfrastructure:masterfrom
ssjunnebo:sync_metadata
Mar 9, 2026
Merged

Sync metadata#14
ssjunnebo merged 13 commits intoNationalGenomicsInfrastructure:masterfrom
ssjunnebo:sync_metadata

Conversation

@ssjunnebo
Copy link
Contributor

Sync metadata to nas-ns when sequencing is done. Specify what metadata should be synced in the metadata_rsync_options part of the config file.

@ssjunnebo ssjunnebo added the no validation validation not needed label Feb 9, 2026
@ssjunnebo ssjunnebo requested review from aanil and alneberg February 9, 2026 15:03
@codecov-commenter
Copy link

codecov-commenter commented Feb 9, 2026

Codecov Report

❌ Patch coverage is 91.04478% with 6 lines in your changes missing coverage. Please review.
✅ Project coverage is 87.87%. Comparing base (13e553a) to head (43dc7ca).
⚠️ Report is 6 commits behind head on master.

Files with missing lines Patch % Lines
dataflow_transfer/run_classes/generic_runs.py 81.81% 5 Missing and 1 partial ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##           master      #14      +/-   ##
==========================================
+ Coverage   87.86%   87.87%   +0.01%     
==========================================
  Files          10       10              
  Lines         519      569      +50     
  Branches       30       33       +3     
==========================================
+ Hits          456      500      +44     
- Misses         60       65       +5     
- Partials        3        4       +1     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

Co-authored-by: Johannes Alneberg <johannes.alneberg@scilifelab.se>
Copy link
Member

@alneberg alneberg left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Looks good! I struggle to follow the different paths in process_run, perhaps we can have a second glance at it at some point.

@ssjunnebo ssjunnebo merged commit 4143ed9 into NationalGenomicsInfrastructure:master Mar 9, 2026
6 checks passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

no validation validation not needed

Projects

None yet

Development

Successfully merging this pull request may close these issues.

3 participants