New module: 10x flex cellranger output protocol

[asiamustafah955]

• This comment contains a description of changes (with reason)

• There is example tool output for tools in the https://github.com/MultiQC/test-data repository or attached to this PR
• Code is tested and works locally (including with --strict flag)
• Report sections have a description and help text (with self.add_section)
• Each table column has a different colour scale to its neighbour, which relates to the data (e.g. if high numbers are bad, they're red)
• Module does not do any significant computational work

This PR adds a new module called custom_csv to MultiQC.
Test data submitted as PR to MultiQC/test-data: MultiQC/test-data#351 — waiting for merge to fix failing tests.

Features:

• Parses CSV files with "Metric Name" and "Metric Value" columns of flex files.
• Associates metrics with sample names based on the file path.
• Displays metrics in both the main report table and general stats.
• Dynamically assigns a color scale to each table column for better visual distinction.

Usage:

Place your CSV files in the logs directory, ensuring they have headers:

• Metric Name
• Metric Value

Testing:

• Works locally with the --strict flag.
• Tested with sample data.

Files added/modified:

• multiqc/modules/custom_csv/*

[asiamustafah955]

@ewels, I was requesting if the label on my pull request could be adjusted to module:new. I requested a PR via a forked repository and therefore do not have the label gear.

[pcm32]

I think that this should be covered by #2861 - maybe you can help in finalising that one?

[asiamustafah955]

I think that this should be covered by #2861 - maybe you can help in finalising that one?

The one I built is for .csv and the PR above is .html. Would you prefer CSV or .html results to be pulled?