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1. ACER ACER Public

   Adapted chi-squared and CMH test to evolve and resequenced data. Includes drift and pool sequencing variance in the tests

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2. SigMoS SigMoS Public

   Cross-validation and model selection for robust learning of mutational signatures

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3. haploSep haploSep Public

   Multiple haplotype estimation from allele frequency data when individual information is not available

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4. haplotest-1 haplotest-1 Public

   Forked from xthchen/haplotest

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5. nmfgenr nmfgenr Public

   General traditional and convex non-negative matrix factorization closed form updates under different divergences.

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6. ParOppR ParOppR Public

   Code to estimate mutational signatures from mutational counts data of cancer patients with the following extensions: (a) incorporating opportunities to the analysis, (b) allowing for extended seque…

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