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Aquadopp #434

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3f181e9
Add initial commit for aquadopp profiler
jmcvey3 Dec 14, 2024
ea18423
Add other aquadopp specific structures
jmcvey3 Dec 17, 2024
dc96f05
Merge branch 'develop' into aquadopp
jmcvey3 Feb 4, 2026
c207a16
Major progress on aquadopp
jmcvey3 Feb 5, 2026
0f522d7
Fix orientation_down attr, nortek code cleanup
jmcvey3 Feb 5, 2026
afc48a2
Update test data to remove orientation_down variable and update AWAC …
jmcvey3 Feb 5, 2026
868985c
Black formatting
jmcvey3 Feb 5, 2026
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1 change: 1 addition & 0 deletions .gitignore
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Expand Up @@ -11,6 +11,7 @@ $ cat .gitignore
*~
*.png
*.index
*.dolfyn.log

# Directories
**/__pycache__/
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96 changes: 48 additions & 48 deletions examples/data/dolfyn/test_data/AWAC_test01.dolfyn.log
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Expand Up @@ -4,98 +4,98 @@ root - INFO - Position: 50, codes: (165, 4)
root - INFO - Reading header configuration (0x04) ping #0 @ 50...
root - INFO - Position: 274, codes: (165, 0)
root - INFO - Reading user configuration (0x00) ping #0 @ 274...
root - INFO - Init completed
root - INFO - Position: 786, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #0 @ 786...
root - INFO - Position: 1086, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #1 @ 1086...
root - INFO - Position: 1386, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #2 @ 1386...
root - INFO - Position: 1686, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #3 @ 1686...
root - INFO - Position: 1986, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #4 @ 1986...
root - INFO - Position: 2286, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #5 @ 2286...
root - INFO - Position: 2586, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #6 @ 2586...
root - INFO - Position: 2886, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #7 @ 2886...
root - INFO - Position: 3186, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #8 @ 3186...
root - INFO - Position: 3486, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #9 @ 3486...
root - INFO - Position: 3786, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #10 @ 3786...
root - INFO - Position: 4086, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #11 @ 4086...
root - INFO - Position: 4386, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #12 @ 4386...
root - INFO - Position: 4686, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #13 @ 4686...
root - INFO - Position: 4986, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #14 @ 4986...
root - INFO - Position: 5286, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #15 @ 5286...
root - INFO - Position: 5586, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #16 @ 5586...
root - INFO - Position: 5886, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #17 @ 5886...
root - INFO - Position: 6186, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #18 @ 6186...
root - INFO - Position: 6486, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #19 @ 6486...
root - INFO - Position: 6786, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #20 @ 6786...
root - INFO - Position: 7086, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #21 @ 7086...
root - INFO - Position: 7386, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #22 @ 7386...
root - INFO - Position: 7686, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #23 @ 7686...
root - INFO - Position: 7986, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #24 @ 7986...
root - INFO - Position: 8286, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #25 @ 8286...
root - INFO - Position: 8586, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #26 @ 8586...
root - INFO - Position: 8886, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #27 @ 8886...
root - INFO - Position: 9186, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #28 @ 9186...
root - INFO - Position: 9486, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #29 @ 9486...
root - INFO - Position: 9786, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #30 @ 9786...
root - INFO - Position: 10086, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #31 @ 10086...
root - INFO - Position: 10386, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #32 @ 10386...
root - INFO - Position: 10686, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #33 @ 10686...
root - INFO - Position: 10986, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #34 @ 10986...
root - INFO - Position: 11286, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #35 @ 11286...
root - INFO - Position: 11586, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #36 @ 11586...
root - INFO - Position: 11886, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #37 @ 11886...
root - INFO - Position: 12186, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #38 @ 12186...
root - INFO - Position: 12486, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #39 @ 12486...
root - INFO - Position: 12786, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #40 @ 12786...
root - INFO - Position: 13086, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #41 @ 13086...
root - INFO - Position: 13386, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #42 @ 13386...
root - INFO - Position: 13686, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #43 @ 13686...
root - INFO - Position: 13986, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #44 @ 13986...
root - INFO - Position: 14286, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #45 @ 14286...
root - INFO - Position: 14586, codes: (165, 32)
root - INFO - Position: 14886, codes: (165, 32)
root - INFO - Position: 15186, codes: (165, 32)
root - INFO - Position: 15486, codes: (165, 32)
root - INFO - Position: 15786, codes: (165, 32)
root - INFO - p0=1084, pos=16084, i=49
root - INFO - Init completed
root - INFO - Position: 786, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #0 @ 786...
root - INFO - Position: 1086, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #1 @ 1086...
root - INFO - Position: 1386, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #2 @ 1386...
root - INFO - Position: 1686, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #3 @ 1686...
root - INFO - Position: 1986, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #4 @ 1986...
root - INFO - Position: 2286, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #5 @ 2286...
root - INFO - Position: 2586, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #6 @ 2586...
root - INFO - Position: 2886, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #7 @ 2886...
root - INFO - Position: 3186, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #8 @ 3186...
root - INFO - Position: 3486, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #9 @ 3486...
root - INFO - Position: 3786, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #10 @ 3786...
root - INFO - Position: 4086, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #11 @ 4086...
root - INFO - Position: 4386, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #12 @ 4386...
root - INFO - Position: 4686, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #13 @ 4686...
root - INFO - Position: 4986, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #14 @ 4986...
root - INFO - Position: 5286, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #15 @ 5286...
root - INFO - Position: 5586, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #16 @ 5586...
root - INFO - Position: 5886, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #17 @ 5886...
root - INFO - Position: 6186, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #18 @ 6186...
root - INFO - Position: 6486, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #19 @ 6486...
root - INFO - Position: 6786, codes: (165, 32)
root - INFO - Reading AWAC velocity data (0x20) ping #20 @ 6786...
root - INFO - Reading AWAC velocity data (0x20) ping #46 @ 14586...
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96 changes: 48 additions & 48 deletions examples/data/dolfyn/test_data/vector_data_imu01.dolfyn.log
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Expand Up @@ -4,98 +4,98 @@ root - INFO - Position: 50, codes: (165, 4)
root - INFO - Reading header configuration (0x04) ping #0 @ 50...
root - INFO - Position: 274, codes: (165, 0)
root - INFO - Reading user configuration (0x00) ping #0 @ 274...
root - INFO - Init completed
root - INFO - Position: 786, codes: (165, 18)
root - INFO - Reading Vector header data (0x12) ping #0 @ 786...
root - INFO - Position: 828, codes: (165, 7)
root - INFO - Reading Vector check data (0x07) ping #0 @ 828...
root - INFO - Position: 1738, codes: (165, 17)
root - INFO - Reading Vector system data (0x11) ping #0 @ 1738...
root - INFO - Position: 1766, codes: (165, 16)
root - INFO - Reading Vector measurements (0x10) ping #0 @ 1766...
root - INFO - Position: 1790, codes: (165, 113)
root - INFO - Reading Vector IMU data (0x71) ping #0 @ 1790...
root - INFO - Position: 1876, codes: (165, 16)
root - INFO - Reading Vector measurements (0x10) ping #1 @ 1876...
root - INFO - Position: 1900, codes: (165, 113)
root - INFO - Reading Vector IMU data (0x71) ping #1 @ 1900...
root - INFO - Position: 1986, codes: (165, 16)
root - INFO - Reading Vector measurements (0x10) ping #2 @ 1986...
root - INFO - Position: 2010, codes: (165, 113)
root - INFO - Reading Vector IMU data (0x71) ping #2 @ 2010...
root - INFO - Position: 2096, codes: (165, 16)
root - INFO - Reading Vector measurements (0x10) ping #3 @ 2096...
root - INFO - Position: 2120, codes: (165, 113)
root - INFO - Reading Vector IMU data (0x71) ping #3 @ 2120...
root - INFO - Position: 2206, codes: (165, 16)
root - INFO - Reading Vector measurements (0x10) ping #4 @ 2206...
root - INFO - Position: 2230, codes: (165, 113)
root - INFO - Reading Vector IMU data (0x71) ping #4 @ 2230...
root - INFO - Position: 2316, codes: (165, 16)
root - INFO - Reading Vector measurements (0x10) ping #5 @ 2316...
root - INFO - Position: 2340, codes: (165, 113)
root - INFO - Reading Vector IMU data (0x71) ping #5 @ 2340...
root - INFO - Position: 2426, codes: (165, 16)
root - INFO - Reading Vector measurements (0x10) ping #6 @ 2426...
root - INFO - Position: 2450, codes: (165, 113)
root - INFO - Reading Vector IMU data (0x71) ping #6 @ 2450...
root - INFO - Position: 2536, codes: (165, 16)
root - INFO - Reading Vector measurements (0x10) ping #7 @ 2536...
root - INFO - Position: 2560, codes: (165, 113)
root - INFO - Reading Vector IMU data (0x71) ping #7 @ 2560...
root - INFO - Position: 2646, codes: (165, 16)
root - INFO - Reading Vector measurements (0x10) ping #8 @ 2646...
root - INFO - Position: 2670, codes: (165, 113)
root - INFO - Reading Vector IMU data (0x71) ping #8 @ 2670...
root - INFO - Position: 2756, codes: (165, 16)
root - INFO - Reading Vector measurements (0x10) ping #9 @ 2756...
root - INFO - Position: 2780, codes: (165, 113)
root - INFO - Reading Vector IMU data (0x71) ping #9 @ 2780...
root - INFO - Position: 2866, codes: (165, 17)
root - INFO - Reading Vector system data (0x11) ping #10 @ 2866...
root - INFO - Position: 2894, codes: (165, 16)
root - INFO - Reading Vector measurements (0x10) ping #10 @ 2894...
root - INFO - Position: 2918, codes: (165, 113)
root - INFO - Reading Vector IMU data (0x71) ping #10 @ 2918...
root - INFO - Position: 3004, codes: (165, 16)
root - INFO - Reading Vector measurements (0x10) ping #11 @ 3004...
root - INFO - Position: 3028, codes: (165, 113)
root - INFO - Reading Vector IMU data (0x71) ping #11 @ 3028...
root - INFO - Position: 3114, codes: (165, 16)
root - INFO - Reading Vector measurements (0x10) ping #12 @ 3114...
root - INFO - Position: 3138, codes: (165, 113)
root - INFO - Reading Vector IMU data (0x71) ping #12 @ 3138...
root - INFO - Position: 3224, codes: (165, 16)
root - INFO - Reading Vector measurements (0x10) ping #13 @ 3224...
root - INFO - Position: 3248, codes: (165, 113)
root - INFO - Reading Vector IMU data (0x71) ping #13 @ 3248...
root - INFO - Position: 3334, codes: (165, 16)
root - INFO - Reading Vector measurements (0x10) ping #14 @ 3334...
root - INFO - Position: 3358, codes: (165, 113)
root - INFO - Reading Vector IMU data (0x71) ping #14 @ 3358...
root - INFO - Position: 3444, codes: (165, 16)
root - INFO - Reading Vector measurements (0x10) ping #15 @ 3444...
root - INFO - Position: 3468, codes: (165, 113)
root - INFO - Reading Vector IMU data (0x71) ping #15 @ 3468...
root - INFO - Position: 3554, codes: (165, 16)
root - INFO - Reading Vector measurements (0x10) ping #16 @ 3554...
root - INFO - Position: 3578, codes: (165, 113)
root - INFO - Reading Vector IMU data (0x71) ping #16 @ 3578...
root - INFO - Position: 3664, codes: (165, 16)
root - INFO - Reading Vector measurements (0x10) ping #17 @ 3664...
root - INFO - Position: 3688, codes: (165, 113)
root - INFO - Reading Vector IMU data (0x71) ping #17 @ 3688...
root - INFO - Position: 3774, codes: (165, 16)
root - INFO - Reading Vector measurements (0x10) ping #18 @ 3774...
root - INFO - Position: 3798, codes: (165, 113)
root - INFO - Reading Vector IMU data (0x71) ping #18 @ 3798...
root - INFO - Position: 3884, codes: (165, 16)
root - INFO - Reading Vector measurements (0x10) ping #19 @ 3884...
root - INFO - Position: 3908, codes: (165, 113)
root - INFO - Reading Vector IMU data (0x71) ping #19 @ 3908...
root - INFO - Position: 3994, codes: (165, 16)
root - INFO - Reading Vector measurements (0x10) ping #20 @ 3994...
root - INFO - Position: 4018, codes: (165, 113)
root - INFO - Reading Vector IMU data (0x71) ping #20 @ 4018...
root - INFO - Position: 4104, codes: (165, 16)
root - INFO - Position: 4128, codes: (165, 113)
root - INFO - Position: 4214, codes: (165, 16)
root - INFO - Position: 4238, codes: (165, 113)
root - INFO - Position: 4324, codes: (165, 16)
root - INFO - Position: 4348, codes: (165, 113)
root - INFO - Position: 4434, codes: (165, 16)
root - INFO - Position: 4458, codes: (165, 113)
root - INFO - Position: 4544, codes: (165, 16)
root - INFO - Position: 4568, codes: (165, 113)
root - INFO - Position: 4654, codes: (165, 16)
root - INFO - Position: 4678, codes: (165, 113)
root - INFO - Position: 4764, codes: (165, 16)
root - INFO - Position: 4788, codes: (165, 113)
root - INFO - Position: 4874, codes: (165, 16)
root - INFO - Position: 4898, codes: (165, 113)
root - INFO - Position: 4984, codes: (165, 16)
root - INFO - Position: 5008, codes: (165, 113)
root - INFO - Position: 5094, codes: (165, 16)
root - INFO - Position: 5118, codes: (165, 113)
root - INFO - Position: 5204, codes: (165, 16)
root - INFO - Position: 5228, codes: (165, 113)
root - INFO - Position: 5314, codes: (165, 16)
root - INFO - Position: 5338, codes: (165, 113)
root - INFO - Position: 5424, codes: (165, 16)
root - INFO - Position: 5448, codes: (165, 113)
root - INFO - Position: 5534, codes: (165, 16)
root - INFO - Position: 5558, codes: (165, 113)
root - INFO - Position: 5644, codes: (165, 16)
root - INFO - Position: 5668, codes: (165, 113)
root - INFO - Position: 5754, codes: (165, 16)
root - INFO - Position: 5778, codes: (165, 113)
root - INFO - Position: 5864, codes: (165, 16)
root - INFO - Position: 5888, codes: (165, 113)
root - INFO - Position: 5974, codes: (165, 16)
root - INFO - Position: 5998, codes: (165, 113)
root - INFO - Position: 6084, codes: (165, 16)
root - INFO - Position: 6108, codes: (165, 113)
root - INFO - Position: 6194, codes: (165, 16)
root - INFO - Position: 6218, codes: (165, 113)
root - INFO - Position: 6304, codes: (165, 16)
root - INFO - Position: 6328, codes: (165, 113)
root - INFO - Position: 6414, codes: (165, 16)
root - INFO - Position: 6438, codes: (165, 17)
root - INFO - Position: 6466, codes: (165, 113)
root - INFO - Position: 6552, codes: (165, 16)
root - INFO - Position: 6576, codes: (165, 113)
root - INFO - Position: 6662, codes: (165, 16)
root - INFO - Position: 6686, codes: (165, 113)
root - INFO - Reading Vector measurements (0x10) ping #21 @ 4104...
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1 change: 0 additions & 1 deletion mhkit/dolfyn/adv/clean.py
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Expand Up @@ -5,7 +5,6 @@
from ..velocity import VelBinner
from ..tools.misc import group, slice1d_along_axis


sin = np.sin
cos = np.cos

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6 changes: 2 additions & 4 deletions mhkit/dolfyn/binned.py
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Expand Up @@ -512,10 +512,8 @@ def _fft_freq(self, fs=None, units="Hz", n_fft=None, coh=False):
fs = self._parse_fs(fs)

if ("Hz" not in units) and ("rad" not in units):
raise Exception(
"Valid fft frequency vector units are Hz \
or rad/s"
)
raise Exception("Valid fft frequency vector units are Hz \
or rad/s")

if "rad" in units:
return fft_frequency(n_fft, 2 * np.pi * fs)
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3 changes: 0 additions & 3 deletions mhkit/dolfyn/io/api.py
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Expand Up @@ -399,9 +399,6 @@ def load_mat(filename, datenum=True):
]:
ds.attrs[nm] = [ds.attrs[nm]]

if hasattr(ds, "orientation_down"):
ds["orientation_down"] = ds["orientation_down"].astype(bool)

if datenum:
func = matlab2date
else:
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6 changes: 2 additions & 4 deletions mhkit/dolfyn/io/base.py
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Original file line number Diff line number Diff line change
Expand Up @@ -62,10 +62,8 @@ def _read_userdata(fname):
for nm in ["body2head_rotmat", "body2head_vec"]:
if nm in data:
new_name = "inst" + nm[4:]
warnings.warn(
f"{nm} has been deprecated, please change this to {new_name} \
in {fname}."
)
warnings.warn(f"{nm} has been deprecated, please change this to {new_name} \
in {fname}.")
data[new_name] = data.pop(nm)
if "inst2head_rotmat" in data:
if data["inst2head_rotmat"] in ["identity", "eye", 1, 1.0]:
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