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1. scFates scFates Public

   a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.

   Python 63 6

2. paperfetch paperfetch Public

   An automated tool that finds recent academic papers, uses AI to summarize and assess their relevance, and sends the results to users by email.

   Python 1

3. simpleppt simpleppt Public

   Python implementation of SimplePPT algorithm, with GPU acceleration

   Python 1

4. scFates_notebooks scFates_notebooks Public

   Jupyter Notebook 10

5. deseq2py deseq2py Public

   python wrapper for DESeq2, compatible with scanpy

   Python 5 1

6. bulktools-py bulktools-py Public

   python CLI for full bulk RNAseq pipeline, from fastq to anndata count matrix

   Python