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Remove support for SQLServer #1121

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Merged
labkey-jeckels merged 1 commit into from
Oct 14, 2025
Merged

Remove support for SQLServer #1121

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1 change: 0 additions & 1 deletion module.properties
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Original file line number Diff line number Diff line change
@@ -1,3 +1,2 @@
ModuleClass: org.labkey.targetedms.TargetedMSModule
SupportedDatabases: mssql, pgsql
ManageVersion: true
2 changes: 1 addition & 1 deletion resources/queries/targetedms/PTMPercentsPrepivot.sql
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Expand Up @@ -9,7 +9,7 @@ SELECT ci.ModifiedAreaProportion,
ci.PeptideId.PeptideGroupId,
psm.IndexAA,
psm.StructuralModId,
-- Explicitly cast for SQLServer to avoid trying to add as numeric types
-- Explicitly cast to avoid trying to add as numeric types
(SUBSTRING(ci.PeptideId.Sequence, IndexAA + 1, 1)) || CAST(ci.PeptideId.StartIndex + IndexAA + 1 AS VARCHAR) AS SiteLocation
FROM
targetedms.GeneralMoleculeChromInfo ci LEFT JOIN
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5 changes: 0 additions & 5 deletions resources/schemas/dbscripts/postgresql/targetedms-0.000-24.000.sql
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Expand Up @@ -3925,8 +3925,6 @@ ALTER TABLE targetedms.spectrumlibrary ALTER COLUMN FileNameHint TYPE VARCHAR(30
ALTER TABLE targetedms.IsotopeModification ALTER COLUMN AminoAcid TYPE VARCHAR(100);
ALTER TABLE targetedms.StructuralModification ALTER COLUMN AminoAcid TYPE VARCHAR(100);

SELECT core.executeJavaInitializationCode('recalculateAreaProportions');

ALTER TABLE targetedms.SampleFile ADD IRTSlope REAL;
ALTER TABLE targetedms.SampleFile ADD IRTIntercept REAL;
ALTER TABLE targetedms.SampleFile ADD IRTCorrelation REAL;
Expand Down Expand Up @@ -4151,9 +4149,6 @@ ALTER TABLE targetedms.ReplicateAnnotation DROP COLUMN source;

ALTER TABLE targetedms.QCAnnotation ADD COLUMN EndDate TIMESTAMP;

-- Poke a new row annotation type into the /Shared project
SELECT core.executeJavaInitializationCode('addInstrumentDowntimeAnnotationType');

UPDATE targetedms.QCMetricConfiguration SET EnabledQueryName = 'QCMetricEnabled_precursorAndTransitionAreas', EnabledSchemaName = 'targetedms' WHERE Name = 'Transition/Precursor Area Ratio';
UPDATE targetedms.QCMetricConfiguration SET EnabledQueryName = 'QCMetricEnabled_precursorAndTransitionAreas', EnabledSchemaName = 'targetedms' WHERE Name = 'Transition & Precursor Areas';
UPDATE targetedms.QCMetricConfiguration SET EnabledQueryName = 'QCMetricEnabled_precursorAndTransitionAreas', EnabledSchemaName = 'targetedms' WHERE Name = 'Total Peak Area (Precursor + Transition)';
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