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Merged
labkey-martyp merged 4 commits into from
May 12, 2025
Merged

View and permission go-live updates #537

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fffa8ab
updated views
labkey-martyp May 12, 2025
ec01e10
pedigree - modified
labkey-martyp May 12, 2025
e74df37
lab results - requires admin
labkey-martyp May 12, 2025
6964c60
Set up protocol/project perms
labkey-martyp May 12, 2025
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1 change: 1 addition & 0 deletions nirc_ehr/resources/queries/dbo/q_clinremarks.sql
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Expand Up @@ -8,6 +8,7 @@ SELECT anmEvt.ANIMAL_EVENT_ID
anmEvt.EVENT_ID.EVENT_ID AS category,
anmEvt.DIAGNOSIS AS vetreview,
anmCmt.TEXT AS remark,
'Clinical' AS category,
CASE WHEN anmEvt.ATTACHMENT_PATH IS NOT NULL THEN
('C:\Program Files\Labkey\labkey\files\NIRC\EHR\@files\attachments'
|| substring(anmEvt.ATTACHMENT_PATH, LENGTH('N:\'), LENGTH(anmEvt.ATTACHMENT_PATH)))
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3 changes: 2 additions & 1 deletion nirc_ehr/resources/queries/study/Pedigree.sql
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Expand Up @@ -24,7 +24,8 @@ SELECT
d.id.demographics.calculated_status as status_code,
d.id.demographics.species.common_name as species,
'' as Display,
'Demographics' as source
'Demographics' as source,
d.modified

FROM study.demographics d
WHERE d.Dam IS NOT NULL OR d.Sire IS NOT NULL
3 changes: 3 additions & 0 deletions nirc_ehr/resources/queries/study/alopecia/.qview.xml
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Expand Up @@ -4,6 +4,9 @@
</sorts>
<columns>
<column name="Id"/>
<column name="Id/Demographics/species"/>
<column name="Id/curLocation/cage/room/floor/building"/>
<column name="Id/curLocation/cage"/>
<column name="date"/>
<column name="score"/>
<column name="units"/>
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3 changes: 3 additions & 0 deletions nirc_ehr/resources/queries/study/blood/.qview.xml
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Expand Up @@ -4,6 +4,9 @@
</sorts>
<columns>
<column name="Id"/>
<column name="Id/Demographics/species"/>
<column name="Id/curLocation/cage/room/floor/building"/>
<column name="Id/curLocation/cage"/>
<column name="date"/>
<column name="quantity"/>
<column name="units"/>
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3 changes: 3 additions & 0 deletions nirc_ehr/resources/queries/study/breeder/.qview.xml
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Expand Up @@ -4,6 +4,9 @@
</sorts>
<columns>
<column name="Id"/>
<column name="Id/Demographics/species"/>
<column name="Id/curLocation/cage/room/floor/building"/>
<column name="Id/curLocation/cage"/>
<column name="date"/>
<column name="type"/>
<column name="result"/>
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3 changes: 3 additions & 0 deletions nirc_ehr/resources/queries/study/chemistryResults/.qview.xml
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@@ -1,6 +1,9 @@
<customView xmlns="http://labkey.org/data/xml/queryCustomView" canOverride="true">
<columns>
<column name="Id"/>
<column name="Id/Demographics/species"/>
<column name="Id/curLocation/cage/room/floor/building"/>
<column name="Id/curLocation/cage"/>
<column name="date"/>
<column name="type"/>
<column name="result"/>
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3 changes: 3 additions & 0 deletions nirc_ehr/resources/queries/study/clinical_observations/.qview.xml
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Expand Up @@ -4,6 +4,9 @@
</sorts>
<columns>
<column name="Id"/>
<column name="Id/Demographics/species"/>
<column name="Id/curLocation/cage/room/floor/building"/>
<column name="Id/curLocation/cage"/>
<column name="date"/>
<column name="area"/>
<column name="observation"/>
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3 changes: 3 additions & 0 deletions nirc_ehr/resources/queries/study/clinical_observations/Alopecia Scores.qview.xml
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Expand Up @@ -4,6 +4,9 @@
</sorts>
<columns>
<column name="Id"/>
<column name="Id/Demographics/species"/>
<column name="Id/curLocation/cage/room/floor/building"/>
<column name="Id/curLocation/cage"/>
<column name="date"/>
<column name="area"/>
<column name="observation"/>
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3 changes: 3 additions & 0 deletions nirc_ehr/resources/queries/study/clinical_observations/Behavior.qview.xml
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Expand Up @@ -4,6 +4,9 @@
</sorts>
<columns>
<column name="Id"/>
<column name="Id/Demographics/species"/>
<column name="Id/curLocation/cage/room/floor/building"/>
<column name="Id/curLocation/cage"/>
<column name="date"/>
<column name="area"/>
<column name="observation"/>
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3 changes: 3 additions & 0 deletions nirc_ehr/resources/queries/study/clinical_observations/Clinical.qview.xml
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Expand Up @@ -4,6 +4,9 @@
</sorts>
<columns>
<column name="Id"/>
<column name="Id/Demographics/species"/>
<column name="Id/curLocation/cage/room/floor/building"/>
<column name="Id/curLocation/cage"/>
<column name="date"/>
<column name="area"/>
<column name="observation"/>
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1 change: 1 addition & 0 deletions nirc_ehr/resources/queries/study/deaths/.qview.xml
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Expand Up @@ -4,6 +4,7 @@
</sorts>
<columns>
<column name="Id"/>
<column name="Id/Demographics/species"/>
<column name="date"/>
<column name="reason"/>
<column name="remark"/>
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2 changes: 2 additions & 0 deletions nirc_ehr/resources/queries/study/demographics/.qview.xml
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Expand Up @@ -4,6 +4,8 @@
</sorts>
<columns>
<column name="Id"/>
<column name="Id/curLocation/cage/room/floor/building"/>
<column name="Id/curLocation/cage"/>
<column name="gender"/>
<column name="birth"/>
<column name="death"/>
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1 change: 1 addition & 0 deletions nirc_ehr/resources/queries/study/departure/.qview.xml
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Expand Up @@ -4,6 +4,7 @@
</sorts>
<columns>
<column name="Id"/>
<column name="Id/Demographics/species"/>
<column name="date"/>
<column name="destination"/>
<column name="description"/>
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3 changes: 3 additions & 0 deletions nirc_ehr/resources/queries/study/drug/.qview.xml
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Expand Up @@ -4,6 +4,9 @@
</sorts>
<columns>
<column name="Id"/>
<column name="Id/Demographics/species"/>
<column name="Id/curLocation/cage/room/floor/building"/>
<column name="Id/curLocation/cage"/>
<column name="date"/>
<column name="enddate"/>
<column name="code"/>
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3 changes: 3 additions & 0 deletions nirc_ehr/resources/queries/study/exemptions/.qview.xml
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Expand Up @@ -4,6 +4,9 @@
</sorts>
<columns>
<column name="Id"/>
<column name="Id/Demographics/species"/>
<column name="Id/curLocation/cage/room/floor/building"/>
<column name="Id/curLocation/cage"/>
<column name="date"/>
<column name="category"/>
<column name="remark"/>
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3 changes: 3 additions & 0 deletions nirc_ehr/resources/queries/study/flags/.qview.xml
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@@ -1,6 +1,9 @@
<customView xmlns="http://labkey.org/data/xml/queryCustomView" label="All Flags" canOverride="true">
<columns>
<column name="Id"/>
<column name="Id/Demographics/species"/>
<column name="Id/curLocation/cage/room/floor/building"/>
<column name="Id/curLocation/cage"/>
<column name="date"/>
<column name="enddate"/>
<column name="flag/category"/>
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1 change: 1 addition & 0 deletions nirc_ehr/resources/queries/study/grossPathology/.qview.xml
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Expand Up @@ -4,6 +4,7 @@
</sorts>
<columns>
<column name="Id"/>
<column name="Id/Demographics/species"/>
<column name="date"/>
<column name="systemExamined"/>
<column name="appearance"/>
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1 change: 1 addition & 0 deletions nirc_ehr/resources/queries/study/housing/.qview.xml
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Expand Up @@ -4,6 +4,7 @@
</sorts>
<columns>
<column name="Id"/>
<column name="Id/Demographics/species"/>
<column name="date"/>
<column name="enddate"/>
<column name="room/fullRoom" />
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1 change: 1 addition & 0 deletions nirc_ehr/resources/queries/study/housing/Active Housing.qview.xml
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@@ -1,6 +1,7 @@
<customView xmlns="http://labkey.org/data/xml/queryCustomView" canOverride="true">
<columns>
<column name="Id"/>
<column name="Id/Demographics/species"/>
<column name="date"/>
<column name="enddate"/>
<column name="cage"/>
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1 change: 1 addition & 0 deletions nirc_ehr/resources/queries/study/necropsy/.qview.xml
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Expand Up @@ -4,6 +4,7 @@
</sorts>
<columns>
<column name="Id"/>
<column name="Id/Demographics/species"/>
<column name="date"/>
<column name="accessionNumber"/>
<column name="examReason"/>
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3 changes: 3 additions & 0 deletions nirc_ehr/resources/queries/study/notes/.qview.xml
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Expand Up @@ -4,6 +4,9 @@
</sorts>
<columns>
<column name="Id"/>
<column name="Id/Demographics/species"/>
<column name="Id/curLocation/cage/room/floor/building"/>
<column name="Id/curLocation/cage"/>
<column name="date"/>
<column name="type"/>
<column name="remark"/>
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3 changes: 3 additions & 0 deletions nirc_ehr/resources/queries/study/obs/.qview.xml
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Expand Up @@ -4,6 +4,9 @@
</sorts>
<columns>
<column name="Id"/>
<column name="Id/Demographics/species"/>
<column name="Id/curLocation/cage/room/floor/building"/>
<column name="Id/curLocation/cage"/>
<column name="date"/>
<column name="category"/>
<column name="diagnosis"/>
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3 changes: 3 additions & 0 deletions nirc_ehr/resources/queries/study/observation_order/.qview.xml
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@@ -1,6 +1,9 @@
<customView xmlns="http://labkey.org/data/xml/queryCustomView" canOverride="true">
<columns>
<column name="Id"/>
<column name="Id/Demographics/species"/>
<column name="Id/curLocation/cage/room/floor/building"/>
<column name="Id/curLocation/cage"/>
<column name="date"/>
<column name="enddate"/>
<column name="category"/>
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3 changes: 3 additions & 0 deletions nirc_ehr/resources/queries/study/observation_order/Active Behavior Orders.qview.xml
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@@ -1,6 +1,9 @@
<customView xmlns="http://labkey.org/data/xml/queryCustomView" canOverride="true">
<columns>
<column name="Id"/>
<column name="Id/Demographics/species"/>
<column name="Id/curLocation/cage/room/floor/building"/>
<column name="Id/curLocation/cage"/>
<column name="date"/>
<column name="enddate"/>
<column name="category"/>
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3 changes: 3 additions & 0 deletions nirc_ehr/resources/queries/study/observation_order/Active Clinical Orders.qview.xml
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@@ -1,6 +1,9 @@
<customView xmlns="http://labkey.org/data/xml/queryCustomView" canOverride="true">
<columns>
<column name="Id"/>
<column name="Id/Demographics/species"/>
<column name="Id/curLocation/cage/room/floor/building"/>
<column name="Id/curLocation/cage"/>
<column name="date"/>
<column name="enddate"/>
<column name="category"/>
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3 changes: 3 additions & 0 deletions nirc_ehr/resources/queries/study/observation_order/Behavior Orders.qview.xml
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<customView xmlns="http://labkey.org/data/xml/queryCustomView" canOverride="true">
<columns>
<column name="Id"/>
<column name="Id/Demographics/species"/>
<column name="Id/curLocation/cage/room/floor/building"/>
<column name="Id/curLocation/cage"/>
<column name="date"/>
<column name="enddate"/>
<column name="category"/>
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3 changes: 3 additions & 0 deletions nirc_ehr/resources/queries/study/observation_order/Clinical Orders.qview.xml
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@@ -1,6 +1,9 @@
<customView xmlns="http://labkey.org/data/xml/queryCustomView" canOverride="true">
<columns>
<column name="Id"/>
<column name="Id/Demographics/species"/>
<column name="Id/curLocation/cage/room/floor/building"/>
<column name="Id/curLocation/cage"/>
<column name="date"/>
<column name="enddate"/>
<column name="category"/>
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3 changes: 3 additions & 0 deletions nirc_ehr/resources/queries/study/pairings/.qview.xml
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Expand Up @@ -5,6 +5,9 @@
<columns>
<column name="updatePairing"/>
<column name="Id"/>
<column name="Id/Demographics/species"/>
<column name="Id/curLocation/cage/room/floor/building"/>
<column name="Id/curLocation/cage"/>
<column name="date"/>
<column name="enddate"/>
<column name="pairid"/>
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3 changes: 3 additions & 0 deletions nirc_ehr/resources/queries/study/physicalExam/.qview.xml
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Expand Up @@ -4,6 +4,9 @@
</sorts>
<columns>
<column name="Id"/>
<column name="Id/Demographics/species"/>
<column name="Id/curLocation/cage/room/floor/building"/>
<column name="Id/curLocation/cage"/>
<column name="date"/>
<column name="exam"/>
<column name="result"/>
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3 changes: 3 additions & 0 deletions nirc_ehr/resources/queries/study/prc/.qview.xml
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Expand Up @@ -4,6 +4,9 @@
</sorts>
<columns>
<column name="Id"/>
<column name="Id/Demographics/species"/>
<column name="Id/curLocation/cage/room/floor/building"/>
<column name="Id/curLocation/cage"/>
<column name="date"/>
<column name="procedure"/>
<column name="remark"/>
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2 changes: 0 additions & 2 deletions nirc_ehr/resources/queries/study/prc_order/.qview.xml
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@@ -1,8 +1,6 @@
<customView xmlns="http://labkey.org/data/xml/queryCustomView" canOverride="true">
<sorts>
<sort column="date" descending="true"/>
<sort column="Id/curLocation/room"/>
<sort column="Id/curLocation/cage"/>
</sorts>
<columns>
<column name="Id"/>
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4 changes: 1 addition & 3 deletions nirc_ehr/resources/queries/study/prc_order_report/.qview.xml
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@@ -1,13 +1,11 @@
<customView xmlns="http://labkey.org/data/xml/queryCustomView" canOverride="true">
<sorts>
<sort column="date" descending="true"/>
<sort column="Id/curLocation/room"/>
<sort column="Id/curLocation/cage"/>
</sorts>
<columns>
<column name="Id"/>
<column name="Id/Demographics/species"/>
<column name="Id/curLocation/room"/>
<column name="Id/curLocation/room/floor/building"/>
<column name="Id/curLocation/cage"/>
<column name="date"/>
<column name="procedure"/>
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3 changes: 0 additions & 3 deletions nirc_ehr/resources/queries/study/treatmentSchedule/.qview.xml
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Expand Up @@ -25,7 +25,4 @@
<sort column="Id/curLocation/room/floor/building"/>
<sort column="Id/curLocation/cage"/>
</sorts>
<filters>
<filter column="calculated_status" operator="eq" value="Alive"/>
</filters>
</customView>
3 changes: 1 addition & 2 deletions nirc_ehr/resources/queries/study/treatmentSchedule/Area 11.qview.xml
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Expand Up @@ -25,7 +25,6 @@
<sort column="Id/curLocation/cage"/>
</sorts>
<filters>
<filter column="calculated_status" operator="eq" value="Alive"/>
<filter column="Id/curLocation/room/floor/building" operator="eq" value="Building 11"/>
<filter column="Id/curLocation/room/floor/building/Description" operator="eq" value="Building 11"/>
</filters>
</customView>
3 changes: 1 addition & 2 deletions nirc_ehr/resources/queries/study/treatmentSchedule/Area 51.qview.xml
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Expand Up @@ -25,7 +25,6 @@
<sort column="Id/curLocation/cage"/>
</sorts>
<filters>
<filter column="calculated_status" operator="eq" value="Alive"/>
<filter column="Id/curLocation/room/floor/building" operator="eq" value="Building 51"/>
<filter column="Id/curLocation/room/floor/building/Description" operator="eq" value="Building 51"/>
</filters>
</customView>
3 changes: 1 addition & 2 deletions nirc_ehr/resources/queries/study/treatmentSchedule/Building 10.qview.xml
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Expand Up @@ -25,7 +25,6 @@
<sort column="Id/curLocation/cage"/>
</sorts>
<filters>
<filter column="calculated_status" operator="eq" value="Alive"/>
<filter column="Id/curLocation/room/floor/building" operator="eq" value="Building 10"/>
<filter column="Id/curLocation/room/floor/building/Description" operator="eq" value="Building 10"/>
</filters>
</customView>
3 changes: 1 addition & 2 deletions nirc_ehr/resources/queries/study/treatmentSchedule/Building 10C.qview.xml
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Expand Up @@ -25,7 +25,6 @@
<sort column="Id/curLocation/cage"/>
</sorts>
<filters>
<filter column="calculated_status" operator="eq" value="Alive"/>
<filter column="Id/curLocation/room/floor/building" operator="eq" value="Building 10C"/>
<filter column="Id/curLocation/room/floor/building/Description" operator="eq" value="Building 10C"/>
</filters>
</customView>
3 changes: 1 addition & 2 deletions nirc_ehr/resources/queries/study/treatmentSchedule/Building 27.qview.xml
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Expand Up @@ -25,7 +25,6 @@
<sort column="Id/curLocation/cage"/>
</sorts>
<filters>
<filter column="calculated_status" operator="eq" value="Alive"/>
<filter column="Id/curLocation/room/floor/building" operator="eq" value="Building 27"/>
<filter column="Id/curLocation/room/floor/building/Description" operator="eq" value="Building 27"/>
</filters>
</customView>
3 changes: 1 addition & 2 deletions nirc_ehr/resources/queries/study/treatmentSchedule/Building 28.qview.xml
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Expand Up @@ -25,7 +25,6 @@
<sort column="Id/curLocation/cage"/>
</sorts>
<filters>
<filter column="calculated_status" operator="eq" value="Alive"/>
<filter column="Id/curLocation/room/floor/building" operator="eq" value="Building 28"/>
<filter column="Id/curLocation/room/floor/building/Description" operator="eq" value="Building 28"/>
</filters>
</customView>
3 changes: 1 addition & 2 deletions nirc_ehr/resources/queries/study/treatmentSchedule/Building 29.qview.xml
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Expand Up @@ -25,7 +25,6 @@
<sort column="Id/curLocation/cage"/>
</sorts>
<filters>
<filter column="calculated_status" operator="eq" value="Alive"/>
<filter column="Id/curLocation/room/floor/building" operator="eq" value="Building 29"/>
<filter column="Id/curLocation/room/floor/building/Description" operator="eq" value="Building 29"/>
</filters>
</customView>
3 changes: 1 addition & 2 deletions nirc_ehr/resources/queries/study/treatmentSchedule/Building 30.qview.xml
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Expand Up @@ -25,7 +25,6 @@
<sort column="Id/curLocation/cage"/>
</sorts>
<filters>
<filter column="calculated_status" operator="eq" value="Alive"/>
<filter column="Id/curLocation/room/floor/building" operator="eq" value="Building 30"/>
<filter column="Id/curLocation/room/floor/building/Description" operator="eq" value="Building 30"/>
</filters>
</customView>
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