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ExperimentDataHandler File->FileLike #237

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Merged
labkey-jeckels merged 2 commits into from
Oct 16, 2025
Merged

ExperimentDataHandler File->FileLike #237

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d710579
ExperimentDataHandler File->FileLike
labkey-jeckels Oct 11, 2025
d13bcca
Merge branch 'develop' into fb_adoptFileLike
labkey-jeckels Oct 14, 2025
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10 changes: 6 additions & 4 deletions ms2extensions/src/org/labkey/ms2extensions/PeptideCountPepXmlDataHandler.java
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Original file line number Diff line number Diff line change
Expand Up @@ -16,6 +16,7 @@
package org.labkey.ms2extensions;

import org.apache.logging.log4j.Logger;
import org.jetbrains.annotations.NotNull;
import org.jetbrains.annotations.Nullable;
import org.labkey.api.data.Container;
import org.labkey.api.exp.ExperimentDataHandler;
Expand All @@ -28,7 +29,8 @@
import org.labkey.api.view.ActionURL;
import org.labkey.api.view.ViewBackgroundInfo;

import java.io.File;
import org.labkey.vfs.FileLike;

import java.io.OutputStream;
import java.util.List;

Expand All @@ -52,15 +54,15 @@ public DataType getDataType()
}

@Override
public void importFile(ExpData data, File dataFile, ViewBackgroundInfo info, Logger log, XarContext context) throws ExperimentException
public void importFile(@NotNull ExpData data, @NotNull FileLike dataFile, @NotNull ViewBackgroundInfo info, @NotNull Logger log, @NotNull XarContext context) throws ExperimentException
{
_realHandler.importFile(data, dataFile, info, log, context);
PeptideCountUpdater updater = new PeptideCountUpdater();
updater.update(data.getContainer(), info.getUser());
}

@Override
public void exportFile(ExpData data, File dataFile, User user, OutputStream out) throws ExperimentException
public void exportFile(ExpData data, FileLike dataFile, User user, OutputStream out) throws ExperimentException
{
_realHandler.exportFile(data, dataFile, user, out);
}
Expand All @@ -84,7 +86,7 @@ public void deleteData(ExpData data, Container container, User user)
}

@Override
public boolean hasContentToExport(ExpData data, File file)
public boolean hasContentToExport(ExpData data, FileLike file)
{
return _realHandler.hasContentToExport(data, file);
}
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