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Merged
labkey-nicka merged 2 commits into from
Jun 17, 2025
Merged

Exclude scijava dependency during server outage #356

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79f6806
Exclude scijava dependency during server outage
labkey-tchad Jun 17, 2025
c161d53
Don't optimize dependencies
labkey-tchad Jun 17, 2025
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42 changes: 21 additions & 21 deletions SequenceAnalysis/build.gradle
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Original file line number Diff line number Diff line change
Expand Up @@ -9,15 +9,15 @@ import org.labkey.gradle.util.ExternalDependency

import java.util.regex.Matcher

repositories {
mavenCentral()
maven {
url "https://maven.scijava.org/content/groups/public/"
content {
includeGroup "cisd" //jhdf5
}
}
}
//repositories {
// mavenCentral()
// maven {
// url "https://maven.scijava.org/content/groups/public/"
// content {
// includeGroup "cisd" //jhdf5
// }
// }
//}

configurations.all {
resolutionStrategy {
Expand Down Expand Up @@ -91,18 +91,18 @@ dependencies {
)
)

BuildUtils.addExternalDependency(
project,
new ExternalDependency(
'cisd:jhdf5:19.04.1',
'JHDF5',
'JHDF5',
'https://unlimited.ethz.ch/display/JHDF/',
ExternalDependency.BSD_LICENSE_NAME,
ExternalDependency.BSD_LICENSE_URL,
'JHDF5 is a Java binding for HDF5. Used by FastQC'
)
)
// BuildUtils.addExternalDependency(
// project,
// new ExternalDependency(
// 'cisd:jhdf5:19.04.1',
// 'JHDF5',
// 'JHDF5',
// 'https://unlimited.ethz.ch/display/JHDF/',
// ExternalDependency.BSD_LICENSE_NAME,
// ExternalDependency.BSD_LICENSE_URL,
// 'JHDF5 is a Java binding for HDF5. Used by FastQC'
// )
// )

BuildUtils.addExternalDependency(
project,
Expand Down
20 changes: 10 additions & 10 deletions jbrowse/build.gradle
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Original file line number Diff line number Diff line change
@@ -1,15 +1,15 @@
import org.labkey.gradle.util.BuildUtils;

repositories {
mavenCentral()
maven {
url "https://maven.scijava.org/content/repositories/public/"
content {
// Transitive dependency from SequenceAnalysis
includeGroup "cisd" //jhdf5
}
}
}
//repositories {
// mavenCentral()
// maven {
// url "https://maven.scijava.org/content/repositories/public/"
// content {
// // Transitive dependency from SequenceAnalysis
// includeGroup "cisd" //jhdf5
// }
// }
//}

dependencies {
apiImplementation "com.github.samtools:htsjdk:${htsjdkVersion}"
Expand Down