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singlecell/resources/chunks/MergeSeurat.R

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@@ -53,6 +53,11 @@ mergeBatchInMemory <- function(datasetIdToFilePath, saveFile) {
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return(saveFile)
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}
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if (is.null(maxAllowableInputFileSizeMb)) {
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logger::log_info('maxAllowableInputFileSizeMb not provided, defaulting to 200')
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maxAllowableInputFileSizeMb <- 200
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}
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mergeBatch <- function(seuratObjects, outerBatchIdx, maxBatchSize = 20, maxInputFileSizeMb = maxAllowableInputFileSizeMb) {
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logger::log_info(paste0('Beginning outer batch: ', outerBatchIdx, ' with total files: ', length(seuratObjects)))
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