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Merged
bbimber merged 3 commits into from
Jul 23, 2025
Merged

Merge discvr-25.3 to develop #257

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e30ed6b
Add tcr repertoire stats table
bbimber Jul 11, 2025
fb2e3a4
Fix sql
bbimber Jul 11, 2025
0f5eccd
Merge discvr-25.3 to develop
bbimber Jul 23, 2025
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16 changes: 16 additions & 0 deletions tcrdb/resources/schemas/dbscripts/postgresql/tcrdb-15.57-15.58.sql
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Original file line number Diff line number Diff line change
@@ -0,0 +1,16 @@
CREATE TABLE tcrdb.repertoire_stats (
rowid SERIAL,
cdna_id int,
metricName varchar(1000),
value double precision,
qualValue varchar(4000),
comment varchar(4000),

container entityid,
created timestamp,
createdby int,
modified timestamp,
modifiedby int,

constraint PK_repertoire_stats PRIMARY KEY (rowid)
);
16 changes: 16 additions & 0 deletions tcrdb/resources/schemas/dbscripts/sqlserver/tcrdb-15.57-15.58.sql
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Original file line number Diff line number Diff line change
@@ -0,0 +1,16 @@
CREATE TABLE tcrdb.repertoire_stats (
rowid int IDENTITY(1,1),
cdna_id int,
metricName varchar(1000),
value double precision,
qualValue varchar(4000),
comment varchar(4000),

container entityid,
created datetime,
createdby int,
modified datetime,
modifiedby int,

constraint PK_repertoire_stats PRIMARY KEY (rowid)
);
54 changes: 54 additions & 0 deletions tcrdb/resources/schemas/tcrdb.xml
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Expand Up @@ -325,6 +325,60 @@
</column>
<column columnName="comment">

</column>
<column columnName="container">
<isHidden>true</isHidden>
</column>
<column columnName="createdby">
<isHidden>true</isHidden>
</column>
<column columnName="created">
<isUserEditable>false</isUserEditable>
<shownInInsertView>false</shownInInsertView>
<shownInUpdateView>false</shownInUpdateView>
<nullable>true</nullable>
<isHidden>true</isHidden>
</column>
<column columnName="modifiedby">
<isHidden>true</isHidden>
</column>
<column columnName="modified">
<isUserEditable>false</isUserEditable>
<shownInInsertView>false</shownInInsertView>
<shownInUpdateView>false</shownInUpdateView>
<nullable>true</nullable>
<isHidden>true</isHidden>
</column>
</columns>
</table>
<table tableName="repertoire_stats" tableDbType="TABLE" useColumnOrder="true">
<javaCustomizer class="org.labkey.laboratory.query.LaboratoryTableCustomizer" />
<tableTitle>TCR Repertoire Stats</tableTitle>
<titleColumn>rowid</titleColumn>
<columns>
<column columnName="rowid">
<columnTitle>Row Id</columnTitle>
<isHidden>true</isHidden>
</column>
<column columnName="cdna_id">
<columnTitle>cDNA ID</columnTitle>
<fk>
<fkDbSchema>singlecell</fkDbSchema>
<fkTable>cdna_libraries</fkTable>
<fkColumnName>rowid</fkColumnName>
</fk>
</column>
<column columnName="metricName">
<columnTitle>Metric Name</columnTitle>
</column>
<column columnName="value">
<columnTitle>Value</columnTitle>
</column>
<column columnName="qualValue">
<columnTitle>Qualitative Value</columnTitle>
</column>
<column columnName="comment">

</column>
<column columnName="container">
<isHidden>true</isHidden>
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2 changes: 1 addition & 1 deletion tcrdb/src/org/labkey/tcrdb/TCRdbModule.java
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Expand Up @@ -46,7 +46,7 @@ public String getName()
@Override
public Double getSchemaVersion()
{
return 15.57;
return 15.58;
}

@Override
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