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Set queueSize to 0 to remove job limit on slurm, upgrade dependencies, bump versions #118

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Merged
bergsalex merged 6 commits into from
Jan 22, 2026
+6 −5
Merged

Set queueSize to 0 to remove job limit on slurm, upgrade dependencies, bump versions #118

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daa114b
Set queueSize to 0 to remove job limit on slurm, bump versions
bergsalex Jan 21, 2026
ada66f4
Update package dependencies
bergsalex Jan 21, 2026
da60707
Downgrade ruff for formatting consistency
bergsalex Jan 21, 2026
5523312
Downgrade typer to fix tests
bergsalex Jan 21, 2026
8844fbc
Update pyproject toml with typer version
bergsalex Jan 21, 2026
262e262
Reverting dependencies
bergsalex Jan 21, 2026
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6 changes: 3 additions & 3 deletions nextflow.config
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Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@ manifest {
mainScript = "main.nf"
defaultBranch = 'main'
nextflowVersion = "!>=22.04.3"
version = "0.2.4"
version = "0.2.5"
contributors = [
[name: 'Brian Geuther'],
[name: 'Alexander Berger-Liedtka']
Expand Down Expand Up @@ -35,8 +35,8 @@ params {
path_depth = 2

/* Image Versions */
image_version = '0.2.4'
jabs_postprocess_version = '0.5.2'
image_version = '0.2.5'
jabs_postprocess_version = '0.5.4'
jabs_behavior_version = '0.36.1'

/*
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1 change: 1 addition & 0 deletions nextflow/configs/profiles/sumner2.config
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Expand Up @@ -564,6 +564,7 @@ process {

executor {
name = 'slurm'
queueSize = 0
submitRateLimit = '2 s'
// Determines the max rate of job submission per time unit, for example '10sec'
// eg. max 10 jobs per second or '1/2 s' i.e. 1 job submissions every 2 seconds.
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2 changes: 1 addition & 1 deletion pyproject.toml
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@@ -1,6 +1,6 @@
[project]
name = "mouse-tracking"
version = "0.2.4"
version = "0.2.5"
description = "Runtime environment for mouse tracking experiments"
requires-python = ">=3.10,<3.11"
packages = ["src/mouse_tracking"]
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2 changes: 1 addition & 1 deletion uv.lock
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