Add 'extend' functionality#6

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gavinband wants to merge 7 commits into

JasonAHendry:masterfrom

gavinband:extend-functionality

Commits on Mar 8, 2026

annotator.py: move **qseqid_df[self.annotations].sum().to_dict() -> **qseqid_df[self.annotations.keys()].sum().to_dict() to fix indexing issue
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Multiply: support an [Extend] section that specifies a previously designed set of primers that this run will extend.
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Updated pipeline image for new [Extend] functionality
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Added a design with [Extend] section
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parsing.py: in [Extend], allow to specify IDs and names, or only IDs, and validate them against the given design file.
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README: Added a section about the [Extend] section
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README: improvement
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