Feature/tree merging #6
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- Add `provenance` column (JSONB) to `haplogroup` table for multi-source attribution; include GIN index for efficient querying. - Introduce `HaplogroupProvenance` domain model for tracking credits and merge info. - Implement `HaplogroupTreeMergeController` with endpoints for tree merges, subtree merges, and previews. - Add unit tests for provenance behavior and controller logic. - Enhance schema evolution with rollback support for `provenance` column.
…e logic - Introduce `VariantInput` model with support for primary names and aliases. - Update `PhyloNodeInput` and related JSON (de)serialization logic to handle variants with aliases. - Extend `HaplogroupTreeMergeService` to handle alias associations and provenance updates. - Add new repository (`VariantAliasRepository`) for managing variant aliases. - Enhance unit tests for variant aliases in tree merge functionality.
… handling** - Updated `addVariantToHaplogroup` to use `ON CONFLICT DO NOTHING` for conflict-free inserts. - Enhanced JSONB mappers to handle `null` uniformly and streamlined `HaplogroupProvenance` mapping logic.
- Replace "Confidence" column with "Provenance" in haplogroup list view. - Add badges for primary credit and contributors in list and detail views. - Extend detail panel with comprehensive provenance details, including contributors, last merge info, and variant sources.
- Introduced `findHaplogroupWithVariants` in `HaplogroupTreeService` to retrieve haplogroup details with associated variants and provenance. - Updated `TreeController` to use the new method for populating additional provenance data in the SNP detail sidebar. - Enhanced `snpDetailSidebar.scala.html` to display haplogroup provenance along with styling updates. - Added utility method `formatSourceName` for consistent provenance source formatting.
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