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get basic trimming in line again w/ cutadapt outputs, in case this tr… nf-core CI #233: Commit 848305b pushed by cjfields
15m 43s dev
dev
15m 43s
fix SE read denoising nf-core CI #232: Commit 9f19aba pushed by cjfields
6m 26s dev
dev
6m 26s
remove dereps from the pooled pipeline; this should help with memory … nf-core CI #231: Commit 8fe3225 pushed by cjfields
5m 54s dev
dev
5m 54s
fix rare issue with empty FASTQ files post-trimming, which breaks DAD… nf-core CI #230: Commit 5e23d51 pushed by cjfields
1m 25s dev
dev
1m 25s
keep the QIIME2 TSV output nf-core CI #229: Commit cae2982 pushed by cjfields
14m 31s dev
dev
14m 31s
simplify names, which greatly simplifies downstream read tracking nf-core CI #228: Commit 73920a7 pushed by cjfields
14m 55s dev
dev
14m 55s
fix name nf-core CI #227: Commit 59832ae pushed by cjfields
14m 19s dev
dev
14m 19s
fix output directories when filtering is set, and update main subwork… nf-core CI #226: Commit f83ace1 pushed by cjfields
3m 1s dev
dev
3m 1s
update nf-core modules nf-core CI #225: Commit 61dbb9e pushed by cjfields
13m 2s dev
dev
13m 2s
update nf-core modules nf-core CI #224: Commit e3a5dd1 pushed by cjfields
1s feature/core-cutadapt
feature/core-cutadapt
1s
try simple change to get pipeline tests going nf-core CI #223: Commit a9b1cc3 pushed by cjfields
14m 34s dev
dev
14m 34s
switch docker containers nf-core CI #222: Commit 780a48c pushed by cjfields
1s dev
dev
1s
remove extraneous comments and lines Docker #20: Commit 31a015f pushed by cjfields
12m 34s docker/DADA-1.36
docker/DADA-1.36
12m 34s
test again, but with new Bioconductor release Docker #19: Commit eb779b2 pushed by cjfields
12m 4s docker/DADA-1.36
docker/DADA-1.36
12m 4s
test again Docker #18: Commit d49f253 pushed by cjfields
1m 10s docker/DADA-1.36
docker/DADA-1.36
1m 10s
test again Docker #17: Commit e90ea3c pushed by cjfields
28s docker/DADA-1.36
docker/DADA-1.36
28s
test again Docker #16: Commit b8ef156 pushed by cjfields
17s docker/DADA-1.36
docker/DADA-1.36
17s
test docker deployment under HPCBio Docker #15: Commit 0c0acfb pushed by cjfields
16s docker/DADA-1.36
docker/DADA-1.36
16s
update nf-core modules nf-core CI #221: Commit efb51a0 pushed by cjfields
13m 14s feature/core-cutadapt
feature/core-cutadapt
13m 14s
start removing unused params nf-core CI #220: Commit 6ae8d1f pushed by cjfields
5m 43s feature/core-cutadapt
feature/core-cutadapt
5m 43s
Major initial push to use nf-core cutadapt; requires some additional … nf-core CI #219: Commit 48f5735 pushed by cjfields
4m 57s feature/core-cutadapt
feature/core-cutadapt
4m 57s
Major revisions: nf-core CI #218: Commit 3c1ebde pushed by cjfields
19m 9s dev
dev
19m 9s
Fairly substantial checkin. Among the changes nf-core CI #217: Commit 6a98e1a pushed by cjfields
21m 12s dev
dev
21m 12s
add in stub code (commented for now) for alternative MSA tools nf-core CI #216: Commit b8ccb74 pushed by cjfields
14m 52s dev
dev
14m 52s
add a few notes nf-core CI #215: Commit e5695a4 pushed by cjfields
21m 10s dev
dev
21m 10s