feat(VOITopo): Create a VOI from a topo and curve

requirements.in

@@ -1,10 +1,10 @@
-opengeode-core==16.3.2
-opengeode-io==7.4.9
-opengeode-inspector==6.8.18
-opengeode-geosciences==9.5.11
-opengeode-geosciencesio==5.8.11
-geode-common==33.20.0
-geode-viewables==3.3.5
+opengeode-core==17.0.1
+opengeode-io==7.6.2
+opengeode-inspector==6.8.21
+opengeode-geosciences==9.5.14
+opengeode-geosciencesio==5.8.14
+geode-common==33.21.5
+geode-viewables==3.3.8
 flask[async]==3.1.2
-flask-cors==6.0.1
-werkzeug==3.1.2
+flask-cors==6.0.2
+werkzeug==3.1.8

requirements.txt

@@ -14,13 +14,13 @@ flask[async]>=3
     # via
     #   -r requirements.in
     #   flask-cors
-flask-cors==6.0.1
+flask-cors==6.0.2
     # via -r requirements.in
-geode-common==33.20.0
+geode-common==33.21.5
     # via
     #   -r requirements.in
     #   geode-viewables
-geode-viewables==3.3.5
+geode-viewables==3.3.8
     # via -r requirements.in
 itsdangerous>=2
     # via flask
@@ -31,7 +31,7 @@ markupsafe>=3
     #   flask
     #   jinja2
     #   werkzeug
-opengeode-core==16.3.2
+opengeode-core==17.0.1
     # via
     #   -r requirements.in
     #   geode-common
@@ -40,24 +40,23 @@ opengeode-core==16.3.2
     #   opengeode-geosciencesio
     #   opengeode-inspector
     #   opengeode-io
-opengeode-geosciences==9.5.11
+opengeode-geosciences==9.5.14
     # via
     #   -r requirements.in
     #   geode-viewables
     #   opengeode-geosciencesio
-opengeode-geosciencesio==5.8.11
+opengeode-geosciencesio==5.8.14
     # via -r requirements.in
-opengeode-inspector==6.8.18
+opengeode-inspector==6.8.21
     # via -r requirements.in
-opengeode-io==7.4.9
+opengeode-io==7.6.2
     # via
     #   -r requirements.in
     #   geode-viewables
     #   opengeode-geosciencesio
-werkzeug==3.1.2
+werkzeug==3.1.8
     # via
     #   -r requirements.in
     #   flask
     #   flask-cors
 
-opengeodeweb-microservice==1.*,>=1.1.3

src/opengeodeweb_back/routes/blueprint_routes.py

@@ -64,7 +64,10 @@ def upload_file() -> flask.Response:
         flask.abort(400, "Filename is required")
     filename = werkzeug.utils.secure_filename(os.path.basename(file.filename))
     print(f"{filename=}", flush=True)
-    file.save(os.path.join(UPLOAD_FOLDER, filename))
+    file_path = os.path.join(UPLOAD_FOLDER, filename)
+    file.save(file_path)
+    if filename.lower().endswith(".csv.json"):
+        shutil.copyfile(file_path, os.path.join(UPLOAD_FOLDER, filename[:-9] + ".json"))
     return flask.make_response({"message": "File uploaded"}, 201)
 
 
@@ -432,10 +435,11 @@ def export_project() -> flask.Response:
 
         for data_id, native_file in rows:
             base_dir = os.path.join(project_folder, data_id)
-
-            native_path = os.path.join(base_dir, str(native_file))
-            if os.path.isfile(native_path):
-                zip_file.write(native_path, os.path.join(data_id, str(native_file)))
+            if os.path.isdir(base_dir):
+                for f_name in os.listdir(base_dir):
+                    file_path = os.path.join(base_dir, f_name)
+                    if os.path.isfile(file_path):
+                        zip_file.write(file_path, os.path.join(data_id, f_name))
 
         zip_file.writestr("snapshot.json", flask.json.dumps(params.snapshot))
 

tests/data/test.csv

@@ -0,0 +1,5 @@
+X,Y,Z
+0.0,0.0,0.0
+1.0,0.0,0.0
+0.0,1.0,0.0
+0.0,0.0,1.0

tests/data/test.csv.json

@@ -0,0 +1,13 @@
+{
+  "separator": ",",
+  "header_row": 0,
+  "first_row": 1,
+  "x_column": 0,
+  "y_column": 1,
+  "z_column": 2,
+  "headerRow": 0,
+  "firstRow": 1,
+  "xColumn": 0,
+  "yColumn": 1,
+  "zColumn": 2
+}

tests/data/test.json

@@ -0,0 +1,13 @@
+{
+  "separator": ",",
+  "header_row": 0,
+  "first_row": 1,
+  "x_column": 0,
+  "y_column": 1,
+  "z_column": 2,
+  "headerRow": 0,
+  "firstRow": 1,
+  "xColumn": 0,
+  "yColumn": 1,
+  "zColumn": 2
+}