feat(dashboards): add collections list view per organism#1098
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fhennig
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For testing: I've created a little script you can run to create a few collections, it'll create them in the backend directly. this is so you can see collections in the table: |
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website/src/components/collections/overview/CollectionsOverview.tsx
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Pull request overview
Adds a new “Collections” feature area in the website dashboards, enabling users to navigate to a collections overview and view organism-specific collections in a table.
Changes:
- Added
/collectionsoverview page and/collections/[organism]organism-specific collections page. - Introduced a new React collections table component that fetches collections from the backend API.
- Updated header/mega-menu, main menu, and hamburger menu entries to include “Collections” with an optional separator.
Reviewed changes
Copilot reviewed 11 out of 11 changed files in this pull request and generated 5 comments.
Show a summary per file
| File | Description |
|---|---|
| website/src/types/pages.ts | Adds route constants for collections pages. |
| website/src/pages/collections/index.astro | New overview page to select an organism. |
| website/src/pages/collections/[organism]/index.astro | New organism-specific collections page + breadcrumbs. |
| website/src/components/collections/overview/CollectionsOverview.tsx | New client-side fetched collections table UI. |
| website/src/layouts/base/header/getPathogenMegaMenuSections.ts | Adds “Collections” entry per organism in the mega menu, with separator support. |
| website/src/layouts/base/header/Navigation.tsx | Wires hasSeparatorAbove through to menu entries. |
| website/src/layouts/base/header/MegaMenu.tsx | Implements visual separator support for mega menu list entries. |
| website/src/layouts/base/header/HamburgerMenuSection.astro | Passes separator flag through to hamburger items. |
| website/src/layouts/base/header/HamburgerMenuItem.astro | Implements visual separator support for hamburger list items. |
| website/src/components/MainMenuItem.astro | Implements visual separator support for main menu list items. |
| website/src/components/MainMenu.astro | Passes separator flag through to main menu items. |
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Each organism's Pathogens menu now includes a Collections link, placed after dashboards and before external Browse data links, with a visual separator above it. Separator is threaded through desktop mega menu, mobile hamburger menu, and landing page organism tiles. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
Adds /collections (organism selector) and /collections/:organism (overview table) as browsable-without-login pages. The overview fetches collections from the backend and displays them in a table. The isLoggedIn prop is wired through from SSR session but unused until create/edit is added in a follow-up PR. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
Use organism background colors, border decorations, and hover states matching the landing page tiles. Grid is 2→3→4 columns across breakpoints. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
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fengelniederhammer
approved these changes
Mar 24, 2026
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Summary
Screenshots
new menu entry and separator:
Collections table:
collections overview:
PR Checklist
Co-Authored-By: Claude Sonnet 4.6 noreply@anthropic.com