chore: upgrade some CI images, reactivate sherlock and clean up some old files.

.github/workflows/docker_build_tpls.yml

@@ -20,12 +20,6 @@ jobs:
 
       matrix:
         include:
-          - name: Ubuntu (20.04, gcc 9.4.0, open-mpi 4.0.3)
-            DOCKER_REPOSITORY: geosx/ubuntu20.04-gcc9
-            DOCKERFILE: docker/tpl-ubuntu-gcc.Dockerfile
-            DOCKER_ROOT_IMAGE: ubuntu:20.04
-            DOCKER_COMPILER_BUILD_ARG: "--build-arg GCC_MAJOR_VERSION=9"
-            RUNS_ON: ubuntu-latest
           - name: Ubuntu (20.04, gcc 10.5.0, open-mpi 4.0.3) - github codespaces
             DOCKER_REPOSITORY: geosx/ubuntu20.04-gcc10
             DOCKERFILE: docker/tpl-ubuntu-gcc.Dockerfile
@@ -50,18 +44,38 @@ jobs:
             DOCKERFILE: docker/tpl-ubuntu-clang.Dockerfile
             DOCKER_COMPILER_BUILD_ARG: "--build-arg CLANG_MAJOR_VERSION=15 --build-arg GCC_MAJOR_VERSION=11"
             RUNS_ON: ubuntu-latest
+          - name: Ubuntu (24.04, gcc 14, open-mpi)
+            DOCKER_REPOSITORY: geosx/ubuntu24.04-gcc14
+            DOCKERFILE: docker/tpl-ubuntu-gcc.Dockerfile
+            DOCKER_ROOT_IMAGE: ubuntu:24.04
+            DOCKER_COMPILER_BUILD_ARG: "--build-arg GCC_MAJOR_VERSION=14"
+            RUNS_ON: ubuntu-latest
           - name: Ubuntu (20.04, clang 10.0.0 + gcc 9.4.0, open-mpi 4.0.3, cuda-11.8.89)
             DOCKER_REPOSITORY: geosx/ubuntu20.04-clang10.0.0-cuda11.8.89
             DOCKERFILE: docker/tpl-ubuntu-clang-cuda.Dockerfile
             RUNS_ON: ubuntu-latest
-          - name: Rockylinux (8, gcc 8.5, cuda 12.5)
-            DOCKER_REPOSITORY: geosx/rockylinux8-gcc8-cuda12.5
+          - name: Rockylinux (8, gcc 8.5, cuda 12.6.1)
+            DOCKER_REPOSITORY: geosx/rockylinux8-gcc8-cuda12.6.1
             DOCKERFILE: docker/tpl-rockylinux-gcc-cuda-12.Dockerfile    
             RUNS_ON: Runner_4core_16GB
           - name: Rockylinux (8, clang 17.0.6, cuda 12.5)
             DOCKER_REPOSITORY: geosx/rockylinux8-clang17-cuda12.5
             DOCKERFILE: docker/tpl-rockylinux-clang-cuda-12.Dockerfile  
             RUNS_ON: Runner_4core_16GB
+          - name: Sherlock CPU (centos 7.9.2009, gcc 10.1.0, open-mpi 4.1.2, openblas 0.3.10, zlib 1.2.11)
+            DOCKER_REPOSITORY: geosx/sherlock-gcc10.1.0-openmpi4.1.2-openblas0.3.10-zlib1.2.11
+            DOCKERFILE: docker/Stanford/Dockerfile
+            DOCKER_ROOT_IMAGE: matteofrigo5/sherlock-gcc10.1.0-openmpi4.1.2-cuda12.4.0-openblas0.3.10-zlib1.2.11-no-geosx:0.0.2
+            HOST_CONFIG: docker/Stanford/sherlock-gcc10-ompi4.1.2-openblas0.3.10.cmake
+            INSTALL_DIR_ROOT: /oak/stanford/groups/tchelepi/geos-sherlock/CPU
+            RUNS_ON: ubuntu-latest
+          - name: Sherlock GPU (centos 7.9.2009, gcc 10.1.0, open-mpi 4.1.2, cuda 12.4.0, openblas 0.3.10, zlib 1.2.11)
+            DOCKER_REPOSITORY: geosx/sherlock-gcc10.1.0-openmpi4.1.2-cuda12.4.0-openblas0.3.10-zlib1.2.11
+            DOCKERFILE: docker/Stanford/Dockerfile
+            DOCKER_ROOT_IMAGE: matteofrigo5/sherlock-gcc10.1.0-openmpi4.1.2-cuda12.4.0-openblas0.3.10-zlib1.2.11-no-geosx:0.0.2
+            HOST_CONFIG: docker/Stanford/sherlock-gcc10-ompi4.1.2-openblas0.3.10-cuda12.4.0-sm70.cmake
+            INSTALL_DIR_ROOT: /oak/stanford/groups/tchelepi/geos-sherlock/GPU
+            RUNS_ON: ubuntu-latest
 
     steps:
     - name: Checkout

docker/Stanford/Dockerfile

@@ -3,7 +3,6 @@ ARG TMP_DIR=/tmp
 ARG SRC_DIR=$TMP_DIR/thirdPartyLibs
 ARG BLD_DIR=$TMP_DIR/build
 
-# The docker base image can be pecan or pangea.
 ARG DOCKER_ROOT_IMAGE
 FROM $DOCKER_ROOT_IMAGE as tpl_toolchain_intersect_geosx_toolchain
 ARG SRC_DIR

docker/Stanford/Sherlock.Dockerfile

@@ -11,8 +11,9 @@ ARG GCC_VERSION=10.1.0
 ARG OPENMPI_VERSION=4.1.2
 ARG OPENBLAS_VERSION=0.3.10
 ARG ZLIB_VERSION=1.2.11
-ARG CUDA_VERSION=11.7.1
-ARG CUDA_SUBVERSION=515.65.01
+ARG CUDA_VERSION=12.4.0
+ARG CUDA_SUBVERSION=550.54.14
+
 
 # Main software root installation directory in SHERLOCK
 ARG SHERLOCK_ROOT_INSTALL_DIR=/share/software/user/open
@@ -28,6 +29,11 @@ FROM centos:7.9.2009 AS shared_components
 RUN yum install -y \
         glibc-devel
 
+# I need these lines because centos 7.9 has reached EOL
+RUN sed -i s/mirror.centos.org/vault.centos.org/g /etc/yum.repos.d/CentOS-*.repo
+RUN sed -i s/^#.*baseurl=http/baseurl=http/g /etc/yum.repos.d/CentOS-*.repo
+RUN sed -i s/^mirrorlist=http/#mirrorlist=http/g /etc/yum.repos.d/CentOS-*.repo
+
 # We'll compile and deploy a version of `gcc` in this stage.
 FROM shared_components AS gcc_stage
 

docker/Stanford/sherlock-gcc10-ompi4.1.2-openblas0.3.10-cuda11.7.1-sm70.cmake → docker/Stanford/sherlock-gcc10-ompi4.1.2-openblas0.3.10-cuda12.4.0-sm70.cmake

@@ -5,7 +5,7 @@ set(ENABLE_OPENMP OFF CACHE BOOL "" FORCE)
 
 # CUDA options
 set(ENABLE_CUDA ON CACHE BOOL "" FORCE)
-set(CUDA_VERSION "11.7.1" CACHE PATH "")
+set(CUDA_VERSION "12.4.0" CACHE PATH "")
 set(CUDA_HOME "${SOFTWARE_ROOT}/cuda/${CUDA_VERSION}" CACHE PATH "")
 set(CMAKE_CUDA_ARCHITECTURES "70" CACHE STRING "")
 set(CUDA_ARCH "sm_${CMAKE_CUDA_ARCHITECTURES}" CACHE STRING "")