refactor: move filter vtk from geos-mesh to geos-processing

docs/geos-mesh.rst

@@ -15,8 +15,6 @@ GEOS Mesh tools
 
       ./geos_mesh_docs/model
 
-      ./geos_mesh_docs/processing
-
       ./geos_mesh_docs/stats
 
       ./geos_mesh_docs/utils

docs/geos_mesh_docs/stats.rst

@@ -1,21 +1,13 @@
 Mesh stats tools
 ^^^^^^^^^^^^^^^^
 
-The `stats` module of `geos-mesh` package contains filter to compute statistics on meshes.
+The `stats` module of `geos-mesh` package contains module to compute statistics on meshes.
 
 
-geos.mesh.stats.CellTypeCounterEnhanced filter
+geos.mesh.stats.meshQualityMetricHelpers module
 -----------------------------------------------
 
-.. automodule:: geos.mesh.stats.CellTypeCounterEnhanced
+.. automodule:: geos.mesh.stats.meshQualityMetricHelpers
     :members:
     :undoc-members:
     :show-inheritance:
-
-geos.mesh.stats.MeshQualityEnhanced filter
--------------------------------------------
-
-.. automodule:: geos.mesh.stats.MeshQualityEnhanced
-    :members:
-    :undoc-members:
-    :show-inheritance:

docs/geos_processing_docs/generic_processing_tools.rst

@@ -1,4 +1,58 @@
 Generic processing filters
 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
 
-In progress..
+The `generic_processing_tools` module of `geos-processing` package contains filters to process meshes.
+
+
+geos.processing.generic_processing_tools.AttributeMapping filter
+----------------------------------------------------------------
+
+.. automodule:: geos.processing.generic_processing_tools.AttributeMapping
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+
+geos.processing.generic_processing_tools.CreateConstantAttributePerRegion filter
+--------------------------------------------------------------------------------
+
+.. automodule:: geos.processing.generic_processing_tools.CreateConstantAttributePerRegion
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+
+geos.processing.generic_processing_tools.FillPartialArrays filter
+-----------------------------------------------------------------
+
+.. automodule:: geos.processing.generic_processing_tools.FillPartialArrays
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+
+geos.processing.generic_processing_tools.SplitMesh filter
+---------------------------------------------------------
+
+.. automodule:: geos.processing.generic_processing_tools.SplitMesh
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+
+geos.processing.generic_processing_tools.MergeBlockEnhanced filter
+------------------------------------------------------------------
+
+.. automodule:: geos.processing.generic_processing_tools.MergeBlockEnhanced
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+
+geos.processing.generic_processing_tools.ClipToMainFrame filter
+---------------------------------------------------------------
+
+.. automodule:: geos.processing.generic_processing_tools.ClipToMainFrame
+    :members:
+    :undoc-members:
+    :show-inheritance:

docs/geos_processing_docs/pre_processing.rst

@@ -1,4 +1,20 @@
 Pre-processing filters
 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
 
-In progress..
+The `pre_processing` module of `geos-processing` package contains filters to pre-process meshes for GEOS simulation.
+
+geos.processing.pre_processing.CellTypeCounterEnhanced filter
+-------------------------------------------------------------
+
+.. automodule:: geos.processing.pre_processing.CellTypeCounterEnhanced
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+geos.processing.pre_processing.MeshQualityEnhanced filter
+---------------------------------------------------------
+
+.. automodule:: geos.processing.pre_processing.MeshQualityEnhanced
+    :members:
+    :undoc-members:
+    :show-inheritance:

geos-mesh/src/geos/mesh/model/QualityMetricSummary.py

@@ -17,11 +17,11 @@
 from matplotlib.patches import Patch
 from vtkmodules.vtkCommonDataModel import ( vtkCellTypes, VTK_TRIANGLE, VTK_QUAD, VTK_TETRA, VTK_PYRAMID,
                                             VTK_HEXAHEDRON, VTK_WEDGE, VTK_POLYGON, VTK_POLYHEDRON )
-from geos.mesh.processing.meshQualityMetricHelpers import ( QUALITY_METRIC_OTHER_START_INDEX, getAllCellTypesExtended,
-                                                            getQualityMeasureNameFromIndex, getQualityMetricFromIndex,
-                                                            MeshQualityMetricEnum, CellQualityMetricEnum,
-                                                            VtkCellQualityMetricEnum, CellQualityMetricAdditionalEnum,
-                                                            QualityMetricOtherEnum, QualityRange )
+from geos.mesh.stats.meshQualityMetricHelpers import ( QUALITY_METRIC_OTHER_START_INDEX, getAllCellTypesExtended,
+                                                       getQualityMeasureNameFromIndex, getQualityMetricFromIndex,
+                                                       MeshQualityMetricEnum, CellQualityMetricEnum,
+                                                       VtkCellQualityMetricEnum, CellQualityMetricAdditionalEnum,
+                                                       QualityMetricOtherEnum, QualityRange )
 from geos.mesh.model.CellTypeCounts import CellTypeCounts
 
 from packaging.version import Version

geos-mesh/tests/test_meshQualityHelpers.py

@@ -10,7 +10,7 @@
 from vtkmodules.vtkCommonDataModel import ( VTK_TRIANGLE, VTK_QUAD, VTK_TETRA, VTK_PYRAMID, VTK_WEDGE, VTK_HEXAHEDRON,
                                             VTK_POLYGON, VTK_POLYHEDRON )
 
-from geos.mesh.processing.meshQualityMetricHelpers import (
+from geos.mesh.stats.meshQualityMetricHelpers import (
     VtkCellQualityMetricEnum,
     CellQualityMetricAdditionalEnum,
     QualityRange,