feat: Single-phase reactive transport combined with HPCReact

[frankfeifan]

This branch aims to implement the single-phase reactive transport model into GEOS. The following tasks are listed for completion:

• A SinglePhaseReactiveTransport solver (derived from SinglePhaseBase) that contains all needed functions to solve the problem and SinglePhaseReactiveTransportFields.hpp to store all necessary fields
• AccumulationKernel and FluxComputeKernel to assemble the local rhs and matrix
• Make everything work for both isothermal and thermal
• Plug in the chemistry module from this repo through a ReactiveSinglePhaseFluid constitutive model
• A unit test testSinglePhaseReactiveTransport to verify the implementation of Jacobian matrix
• Examples for representative reaction systems
• A porosity model that updates the solid porosity with chemical reaction
• Update surfaceArea (added but need test)
• MoMaS verification (transport + all equilibrium) and generic chain reaction verification (transport + all kinetic)

[jhuang2601]

@frankfeifan @rrsettgast I move it to the testing queue, due to CI failures. Can you please fix these failures?

[frankfeifan]

@frankfeifan @rrsettgast I move it to the testing queue, due to CI failures. Can you please fix these failures?

Yes. We're now working on the code style and documentation test failure. After fixing these two, we will just need to update the new integrated test id.

[herve-gross]

Approving to avoid holding this up, but I have not looked at the code in detail.